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5knd

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Current revision (10:49, 27 September 2023) (edit) (undo)
 
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<StructureSection load='5knd' size='340' side='right'caption='[[5knd]], [[Resolution|resolution]] 2.89&Aring;' scene=''>
<StructureSection load='5knd' size='340' side='right'caption='[[5knd]], [[Resolution|resolution]] 2.89&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5knd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Entha Entha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KND FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5knd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae_ATCC_9790 Enterococcus hirae ATCC 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KND FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.888&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5knb|5knb]], [[5knc|5knc]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ntpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=768486 ENTHA]), ntpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=768486 ENTHA]), ntpD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=768486 ENTHA]), ntpG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=768486 ENTHA])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5knd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5knd OCA], [https://pdbe.org/5knd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5knd RCSB], [https://www.ebi.ac.uk/pdbsum/5knd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5knd ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sodium-transporting_two-sector_ATPase Sodium-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.15 3.6.3.15] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5knd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5knd OCA], [http://pdbe.org/5knd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5knd RCSB], [http://www.ebi.ac.uk/pdbsum/5knd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5knd ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/NTPG_ENTHA NTPG_ENTHA]] Involved in ATP-driven sodium extrusion. [[http://www.uniprot.org/uniprot/NTPA_ENTHA NTPA_ENTHA]] Involved in ATP-driven sodium extrusion. [[http://www.uniprot.org/uniprot/NTPD_ENTHA NTPD_ENTHA]] Involved in ATP-driven sodium extrusion.<ref>PMID:8157629</ref> [[http://www.uniprot.org/uniprot/NTPB_ENTHA NTPB_ENTHA]] Involved in ATP-driven sodium extrusion.
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[https://www.uniprot.org/uniprot/NTPA_ENTHA NTPA_ENTHA] Involved in ATP-driven sodium extrusion.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Entha]]
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[[Category: Enterococcus hirae ATCC 9790]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Sodium-transporting two-sector ATPase]]
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[[Category: Imai FL]]
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[[Category: Imai, F L]]
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[[Category: Ishizuka-Katsura Y]]
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[[Category: Ishizuka-Katsura, Y]]
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[[Category: Kakinuma Y]]
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[[Category: Kakinuma, Y]]
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[[Category: Maruyama S]]
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[[Category: Maruyama, S]]
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[[Category: Mizutani K]]
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[[Category: Mizutani, K]]
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[[Category: Muneyuki E]]
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[[Category: Muneyuki, E]]
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[[Category: Murata T]]
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[[Category: Murata, T]]
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[[Category: Shimono K]]
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[[Category: Shimono, K]]
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[[Category: Shirouzu M]]
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[[Category: Shirouzu, M]]
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[[Category: Suzuki K]]
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[[Category: Suzuki, K]]
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[[Category: Yamato I]]
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[[Category: Yamato, I]]
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[[Category: Yokoyama S]]
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[[Category: Yokoyama, S]]
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[[Category: Atp binding]]
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[[Category: Hydrolase]]
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[[Category: P-loop]]
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Current revision

Crystal structure of the Pi-bound V1 complex

PDB ID 5knd

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