2k6q
From Proteopedia
(Difference between revisions)
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<StructureSection load='2k6q' size='340' side='right'caption='[[2k6q]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | <StructureSection load='2k6q' size='340' side='right'caption='[[2k6q]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2k6q]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2k6q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K6Q FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ugm|1ugm]], [[2zjd|2zjd]]</td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ugm|1ugm]], [[2zjd|2zjd]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Map1lc3b, Map1alc3, Map1lc3 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Map1lc3b, Map1alc3, Map1lc3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k6q OCA], [https://pdbe.org/2k6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k6q RCSB], [https://www.ebi.ac.uk/pdbsum/2k6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k6q ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [[ | + | [[https://www.uniprot.org/uniprot/MLP3B_RAT MLP3B_RAT]] Probably involved in formation of autophagosomal vacuoles (autophagosomes). [[https://www.uniprot.org/uniprot/SQSTM_RAT SQSTM_RAT]] Required both for the formation and autophagic degradation of polyubiquitin-containing bodies, called ALIS (aggresome-like induced structures). Links ALIS to the autophagic machinery via direct interaction with MAP1 LC3 family members (By similarity). May regulate the activation of NFKB1 by TNF-alpha, nerve growth factor (NGF) and interleukin-1. Adapter that mediates the interaction between TRAF6 and CYLD (By similarity). May play a role in titin/TTN downstream signaling in muscle cells. May regulate signaling cascades through ubiquitination. May be involved in cell differentiation, apoptosis, immune response and regulation of K(+) channels. Isoform 1 is more potent than isoform 2 to stimulate PRKCZ-dependent phosphorylation of KCNAB2.<ref>PMID:10477520</ref> <ref>PMID:11244088</ref> <ref>PMID:11500922</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] |
Revision as of 07:04, 1 December 2021
LC3 p62 complex structure
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Categories: Buffalo rat | Large Structures | Adachi, W | Fujioka, Y | Inagaki, F | Ishii, J | Kumeta, H | Nakatogawa, H | Noda, N | Ohsumi, Y | Satoo, K | Alternative splicing | Apoptosis | Apoptosis inhibitor-apoptosis complex | Autophagy | Cytoplasm | Cytoplasmic vesicle | Differentiation | Endosome | Immune response | Lc3 | Lipoprotein | Membrane | Metal-binding | Microtubule | Nucleus | P62 | Phosphoprotein | Ubl conjugation pathway | Zinc | Zinc-finger