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6bo5

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Revision as of 23:25, 10 April 2020

TRPV2 ion channel in partially closed state

6bo5, resolution 3.60Å

Structural highlights

6bo5 is a 4 chain structure with sequence from Buffalo rat. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	6bo4
Gene:	Trpv2, Sac2b, Vrl1 (Buffalo rat)
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[TRPV2_RAT] Calcium-permeable, non-selective cation channel with an outward rectification. Seems to be regulated, at least in part, by growth factors, like IGF1, PDGF and morphogenetic neuropeptide/head activator. May transduce physical stimuli in mast cells. Activated by temperatures higher than 52 degrees Celsius; is not activated by vanilloids and acidic pH (By similarity).^[1] ^[2]

Publication Abstract from PubMed

Cation channels of the transient receptor potential (TRP) family serve important physiological roles by opening in response to diverse intra- and extracellular stimuli that regulate their lower or upper gates. Despite extensive studies, the mechanism coupling these gates has remained obscure. Previous structures have failed to resolve extracellular loops, known in the TRPV subfamily as 'pore turrets', which are proximal to the upper gates. We established the importance of the pore turret through activity assays and by solving structures of rat TRPV2, both with and without an intact turret at resolutions of 4.0 A and 3.6 A, respectively. These structures resolve the full-length pore turret and reveal fully open and partially open states of TRPV2, both with unoccupied vanilloid pockets. Our results suggest a mechanism by which physiological signals, such as lipid binding, can regulate the lower gate and couple to the upper gate through a pore-turret-facilitated mechanism.

Structures of TRPV2 in distinct conformations provide insight into role of the pore turret.,Dosey TL, Wang Z, Fan G, Zhang Z, Serysheva II, Chiu W, Wensel TG Nat Struct Mol Biol. 2019 Jan;26(1):40-49. doi: 10.1038/s41594-018-0168-8. Epub, 2018 Dec 31. PMID:30598551^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Caterina MJ, Rosen TA, Tominaga M, Brake AJ, Julius D. A capsaicin-receptor homologue with a high threshold for noxious heat. Nature. 1999 Apr 1;398(6726):436-41. PMID:10201375 doi:http://dx.doi.org/10.1038/18906
↑ Stokes AJ, Shimoda LM, Koblan-Huberson M, Adra CN, Turner H. A TRPV2-PKA signaling module for transduction of physical stimuli in mast cells. J Exp Med. 2004 Jul 19;200(2):137-47. Epub 2004 Jul 12. PMID:15249591 doi:http://dx.doi.org/10.1084/jem.20032082
↑ Dosey TL, Wang Z, Fan G, Zhang Z, Serysheva II, Chiu W, Wensel TG. Structures of TRPV2 in distinct conformations provide insight into role of the pore turret. Nat Struct Mol Biol. 2019 Jan;26(1):40-49. doi: 10.1038/s41594-018-0168-8. Epub, 2018 Dec 31. PMID:30598551 doi:http://dx.doi.org/10.1038/s41594-018-0168-8

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6bo5"

@@ Line 3: / Line 3: @@
 <SX load='6bo5' size='340' side='right' viewer='molstar' caption='[[6bo5]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6bo5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BO5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6bo5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BO5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6BO5 FirstGlance]. <br>
 </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6bo4|6bo4]]</td></tr>
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Trpv2, Sac2b, Vrl1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bo5 OCA], [http://pdbe.org/6bo5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bo5 RCSB], [http://www.ebi.ac.uk/pdbsum/6bo5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bo5 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6bo5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bo5 OCA], [http://pdbe.org/6bo5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bo5 RCSB], [http://www.ebi.ac.uk/pdbsum/6bo5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bo5 ProSAT]</span></td></tr>
 </table>
 == Function ==

6bo5

From Proteopedia

Revision as of 23:25, 10 April 2020

TRPV2 ion channel in partially closed state

Structural highlights

Function

Publication Abstract from PubMed

References

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