This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6lfd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:59, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6lfd' size='340' side='right'caption='[[6lfd]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
<StructureSection load='6lfd' size='340' side='right'caption='[[6lfd]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6lfd]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_alginolytica"_miyamoto_et_al._1961 "oceanomonas alginolytica" miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6LFD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6lfd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LFD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">vmb-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=663 "Oceanomonas alginolytica" Miyamoto et al. 1961])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6lfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lfd OCA], [http://pdbe.org/6lfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lfd RCSB], [http://www.ebi.ac.uk/pdbsum/6lfd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lfd ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lfd OCA], [https://pdbe.org/6lfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lfd RCSB], [https://www.ebi.ac.uk/pdbsum/6lfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lfd ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A5Q5ADH9_VIBAL A0A5Q5ADH9_VIBAL]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Oceanomonas alginolytica miyamoto et al. 1961]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chen, S]]
+
[[Category: Vibrio alginolyticus]]
-
[[Category: Cheng, Q]]
+
[[Category: Chen S]]
-
[[Category: Hydrolase]]
+
[[Category: Cheng Q]]
-
[[Category: Metallo-beta-lactamase]]
+
-
[[Category: Subclasse b1]]
+

Current revision

Crystal structure of VMB-1 at pH5.5(Bis-Tris)

PDB ID 6lfd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools