5cwy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5cwy' size='340' side='right'caption='[[5cwy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='5cwy' size='340' side='right'caption='[[5cwy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cwy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanor Xanor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CWY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CWY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cwy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CWY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CWY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4WL:4H-THIENO[3,2-B]PYROLE-5-CARBOXYLIC+ACID'>4WL</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4WL:4H-THIENO[3,2-B]PYROLE-5-CARBOXYLIC+ACID'>4WL</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cp0|5cp0]], [[5cpd|5cpd]], [[5cvk|5cvk]], [[5cvp|5cvp]], [[5cvq|5cvq]], [[5cwx|5cwx]], [[5cx0|5cx0]], [[5cxj|5cxj]], [[5cy7|5cy7]], [[5cy8|5cy8]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cwy OCA], [https://pdbe.org/5cwy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cwy RCSB], [https://www.ebi.ac.uk/pdbsum/5cwy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cwy ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def, XOO1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=291331 XANOR])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cwy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cwy OCA], [http://pdbe.org/5cwy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cwy RCSB], [http://www.ebi.ac.uk/pdbsum/5cwy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cwy ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
+
[https://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Peptide deformylase]]
+
[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]]
-
[[Category: Xanor]]
+
[[Category: Kang LW]]
-
[[Category: Kang, L W]]
+
[[Category: Ngo HPT]]
-
[[Category: Ngo, H P.T]]
+
-
[[Category: Fragment]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Metallopeptidase]]
+
-
[[Category: Xanthomona]]
+

Revision as of 10:11, 21 June 2023

Structure of Xoo1075, a peptide deformylase from Xanthomonas oryze pv oryzae, in complex with fragment 83

PDB ID 5cwy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools