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5di0

From Proteopedia

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Current revision (21:42, 28 June 2023) (edit) (undo)
 
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<StructureSection load='5di0' size='340' side='right'caption='[[5di0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='5di0' size='340' side='right'caption='[[5di0]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5di0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DI0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5DI0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5di0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DI0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4zno|4zno]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">zgc,113413 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5di0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5di0 OCA], [https://pdbe.org/5di0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5di0 RCSB], [https://www.ebi.ac.uk/pdbsum/5di0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5di0 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5di0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5di0 OCA], [http://pdbe.org/5di0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5di0 RCSB], [http://www.ebi.ac.uk/pdbsum/5di0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5di0 ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AEP1_DANRE AEP1_DANRE] Pore-forming protein which might play a role in host defense. Exists as an antiparallel dimer in solution. Can also assemble into an octameric pore-like structure spanning the cell membrane. Oligomerization may be triggered by binding of the jacalin-type lectin domain to high-mannose cell-surface proteoglycans, and also requires a low pH environment. In vitro, shows high binding affinity for S.cerevisiae mannan and human HIV virus glycoprotein gp120.<ref>PMID:26711430</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Brachidanio rerio]]
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[[Category: Danio rerio]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chen, Y]]
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[[Category: Chen Y]]
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[[Category: Cheng, W]]
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[[Category: Cheng W]]
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[[Category: Jia, N]]
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[[Category: Jia N]]
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[[Category: Jiang, Y L]]
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[[Category: Jiang YL]]
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[[Category: Wang, H W]]
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[[Category: Wang HW]]
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[[Category: Zhou, C Z]]
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[[Category: Zhou CZ]]
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[[Category: Aeolysin-like protein]]
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[[Category: Complex]]
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[[Category: High-mannose glycan]]
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[[Category: Pore-forming protein]]
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[[Category: Sugar binding protein]]
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[[Category: Vetebrate]]
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Current revision

Crystal structure of Dln1

PDB ID 5di0

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