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5zfu

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Current revision (10:27, 27 March 2024) (edit) (undo)
 
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<SX load='5zfu' size='340' side='right' viewer='molstar' caption='[[5zfu]], [[Resolution|resolution]] 6.70&Aring;' scene=''>
<SX load='5zfu' size='340' side='right' viewer='molstar' caption='[[5zfu]], [[Resolution|resolution]] 6.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5zfu]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFU OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ZFU FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5zfu]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZFU FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">exbB, b3006, JW2974 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI]), exbD, b3005, JW2973 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5zfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfu OCA], [http://pdbe.org/5zfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zfu RCSB], [http://www.ebi.ac.uk/pdbsum/5zfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfu ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfu OCA], [https://pdbe.org/5zfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zfu RCSB], [https://www.ebi.ac.uk/pdbsum/5zfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfu ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/EXBB_ECOLI EXBB_ECOLI]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB. [[http://www.uniprot.org/uniprot/EXBD_ECOLI EXBD_ECOLI]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
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[https://www.uniprot.org/uniprot/EXBB_ECOLI EXBB_ECOLI] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Gram-negative bacteria import essential nutrients such as iron and vitamin B12 through outer membrane receptors. This process utilizes proton motive force harvested by the Ton system made up of three inner membrane proteins, ExbB, ExbD and TonB. ExbB and ExbD form the proton channel that energizes uptake through TonB. Recently, crystal structures suggest that the ExbB pentamer is the scaffold. Here, we present structures of hexameric complexes of ExbB and ExbD revealed by X-ray crystallography and single particle cryo-EM. Image analysis shows that hexameric and pentameric complexes coexist, with the proportion of hexamer increasing with pH. Channel current measurement and 2D crystallography support the existence and transition of the two oligomeric states in membranes. The hexameric complex consists of six ExbB subunits and three ExbD transmembrane helices enclosed within the central channel. We propose models for activation/inactivation associated with hexamer and pentamer formation and utilization of proton motive force.
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Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.,Maki-Yonekura S, Matsuoka R, Yamashita Y, Shimizu H, Tanaka M, Iwabuki F, Yonekura K Elife. 2018 Apr 17;7. pii: 35419. doi: 10.7554/eLife.35419. PMID:29661272<ref>PMID:29661272</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5zfu" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
*[[ExbB|ExbB]]
*[[ExbB|ExbB]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</SX>
</SX>
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[[Category: Ecoli]]
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[[Category: Escherichia coli K-12]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Maki-Yonekura, S]]
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[[Category: Maki-Yonekura S]]
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[[Category: Matsuoka, R]]
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[[Category: Matsuoka R]]
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[[Category: Yamashita, Y]]
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[[Category: Yamashita Y]]
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[[Category: Yonekura, K]]
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[[Category: Yonekura K]]
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[[Category: Energizer]]
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[[Category: Ion channel]]
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[[Category: Proton motive force]]
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[[Category: Ton system]]
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[[Category: Transport protein]]
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[[Category: Transporter]]
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Current revision

Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)

5zfu, resolution 6.70Å

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