5zgb

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Current revision (12:23, 6 November 2024) (edit) (undo)
 
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<SX load='5zgb' size='340' side='right' viewer='molstar' caption='[[5zgb]], [[Resolution|resolution]] 3.63&Aring;' scene=''>
<SX load='5zgb' size='340' side='right' viewer='molstar' caption='[[5zgb]], [[Resolution|resolution]] 3.63&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5zgb]] is a 17 chain structure with sequence from [http://en.wikipedia.org/wiki/Cyanidioschyzon_merolae_(strain_10d) Cyanidioschyzon merolae (strain 10d)] and [http://en.wikipedia.org/wiki/Cyanidioschyzon_merolae_strain_10d Cyanidioschyzon merolae strain 10d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZGB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ZGB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5zgb]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyanidioschyzon_merolae_strain_10D Cyanidioschyzon merolae strain 10D]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZGB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZGB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1DO:1-DODECANOL'>1DO</scene>, <scene name='pdbligand=3XQ:(2S)-2,3-dihydroxypropyl+octadecanoate'>3XQ</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CL0:CHLOROPHYLL+A+ISOMER'>CL0</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=ZEX:(3S,5R,6S,3S,5R,6S)+BETA-CAROTENE-3,23-DIOL'>ZEX</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.63&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1DO:1-DODECANOL'>1DO</scene>, <scene name='pdbligand=3XQ:(2S)-2,3-dihydroxypropyl+octadecanoate'>3XQ</scene>, <scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=ZEX:(3S,5R,6S,3S,5R,6S)+BETA-CAROTENE-3,23-DIOL'>ZEX</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5zgb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zgb OCA], [http://pdbe.org/5zgb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zgb RCSB], [http://www.ebi.ac.uk/pdbsum/5zgb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zgb ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zgb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zgb OCA], [https://pdbe.org/5zgb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zgb RCSB], [https://www.ebi.ac.uk/pdbsum/5zgb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zgb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/PSAC_CYAM1 PSAC_CYAM1]] Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. [[http://www.uniprot.org/uniprot/Q85FQ6_CYAM1 Q85FQ6_CYAM1]] May help in the organization of the PsaL subunit.[SAAS:SAAS00400928] [[http://www.uniprot.org/uniprot/PSAB_CYAM1 PSAB_CYAM1]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6. [[http://www.uniprot.org/uniprot/PSAJ_CYAM1 PSAJ_CYAM1]] May help in the organization of the PsaE and PsaF subunits. [[http://www.uniprot.org/uniprot/PSAA_CYAM1 PSAA_CYAM1]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.
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[https://www.uniprot.org/uniprot/Q85FZ1_CYAM1 Q85FZ1_CYAM1]
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Photosystem I|Photosystem I]]
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*[[Photosystem I 3D structures|Photosystem I 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</SX>
</SX>
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[[Category: Cyanidioschyzon merolae strain 10d]]
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[[Category: Cyanidioschyzon merolae strain 10D]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Photosystem I]]
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[[Category: Pi X]]
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[[Category: Pi, X]]
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[[Category: Photosynthesis]]
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[[Category: Psi-5lhcr]]
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[[Category: Red alga]]
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[[Category: Super-complex]]
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Current revision

Cryo-EM structure of the red algal PSI-LHCR

5zgb, resolution 3.63Å

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