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| | <SX load='6btm' size='340' side='right' viewer='molstar' caption='[[6btm]], [[Resolution|resolution]] 3.40Å' scene=''> | | <SX load='6btm' size='340' side='right' viewer='molstar' caption='[[6btm]], [[Resolution|resolution]] 3.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6btm]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Cytophaga_johnsonae Cytophaga johnsonae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BTM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6BTM FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6btm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacterium_johnsoniae_UW101 Flavobacterium johnsoniae UW101]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BTM FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E87:(2R)-3-{[(2R)-2-(decanoylamino)-3-hydroxypropyl]sulfanyl}propane-1,2-diyl+ditetradecanoate'>E87</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.4Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6btm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6btm OCA], [http://pdbe.org/6btm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6btm RCSB], [http://www.ebi.ac.uk/pdbsum/6btm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6btm ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FAW:[(2S)-3-oxidanyl-2-tetradecanoyloxy-propyl]+tetradecanoate'>FAW</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6btm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6btm OCA], [https://pdbe.org/6btm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6btm RCSB], [https://www.ebi.ac.uk/pdbsum/6btm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6btm ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A5FJF2_FLAJ1 A5FJF2_FLAJ1] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </SX> | | </SX> |
| - | [[Category: Cytophaga johnsonae]] | + | [[Category: Flavobacterium johnsoniae UW101]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Benlekbir, S]] | + | [[Category: Benlekbir S]] |
| - | [[Category: Gennis, R B]] | + | [[Category: Gennis RB]] |
| - | [[Category: Rubinstein, J L]] | + | [[Category: Rubinstein JL]] |
| - | [[Category: Sun, C]] | + | [[Category: Sun C]] |
| - | [[Category: Tajkhorshid, E]] | + | [[Category: Tajkhorshid E]] |
| - | [[Category: Venkatakrishnan, P]] | + | [[Category: Venkatakrishnan P]] |
| - | [[Category: Yuhang, W]] | + | [[Category: Yuhang W]] |
| - | [[Category: Electron transport chain]]
| + | |
| - | [[Category: Heme c domain]]
| + | |
| - | [[Category: Iron-sulfur cluster]]
| + | |
| - | [[Category: Membrane protein]]
| + | |
| - | [[Category: Triacylated cysteine]]
| + | |
| Structural highlights
Function
A5FJF2_FLAJ1
Publication Abstract from PubMed
Alternative complex III (ACIII) is a key component of the respiratory and/or photosynthetic electron transport chains of many bacteria(1-3). Like complex III (also known as the bc1 complex), ACIII catalyses the oxidation of membrane-bound quinol and the reduction of cytochrome c or an equivalent electron carrier. However, the two complexes have no structural similarity(4-7). Although ACIII has eluded structural characterization, several of its subunits are known to be homologous to members of the complex iron-sulfur molybdoenzyme (CISM) superfamily (8) , including the proton pump polysulfide reductase(9,10). We isolated the ACIII from Flavobacterium johnsoniae with native lipids using styrene maleic acid copolymer(11-14), both as an independent enzyme and as a functional 1:1 supercomplex with an aa3-type cytochrome c oxidase (cyt aa3). We determined the structure of ACIII to 3.4 A resolution by cryo-electron microscopy and constructed an atomic model for its six subunits. The structure, which contains a [3Fe-4S] cluster, a [4Fe-4S] cluster and six haem c units, shows that ACIII uses known elements from other electron transport complexes arranged in a previously unknown manner. Modelling of the cyt aa3 component of the supercomplex revealed that it is structurally modified to facilitate association with ACIII, illustrating the importance of the supercomplex in this electron transport chain. The structure also resolves two of the subunits of ACIII that are anchored to the lipid bilayer with N-terminal triacylated cysteine residues, an important post-translational modification found in numerous prokaryotic membrane proteins that has not previously been observed structurally in a lipid bilayer.
Structure of the alternative complex III in a supercomplex with cytochrome oxidase.,Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB Nature. 2018 May;557(7703):123-126. doi: 10.1038/s41586-018-0061-y. Epub 2018 Apr, 25. PMID:29695868[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB. Structure of the alternative complex III in a supercomplex with cytochrome oxidase. Nature. 2018 May;557(7703):123-126. doi: 10.1038/s41586-018-0061-y. Epub 2018 Apr, 25. PMID:29695868 doi:http://dx.doi.org/10.1038/s41586-018-0061-y
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