6pkx
From Proteopedia
(Difference between revisions)
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<SX load='6pkx' size='340' side='right' viewer='molstar' caption='[[6pkx]], [[Resolution|resolution]] 4.20Å' scene=''> | <SX load='6pkx' size='340' side='right' viewer='molstar' caption='[[6pkx]], [[Resolution|resolution]] 4.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6pkx]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[6pkx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PKX FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.2Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6pkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pkx OCA], [https://pdbe.org/6pkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6pkx RCSB], [https://www.ebi.ac.uk/pdbsum/6pkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6pkx ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/TRPM2_DANRE TRPM2_DANRE] Nonselective, voltage-independent cation channel that mediates Ca(2+) influx, leading to increased cytoplasmic Ca(2+) levels. Functions as a ligand-gated ion channel. Binding of ADP-ribose to the cytoplasmic N-terminal region causes a conformation change; the channel is primed but still requires Ca(2+) binding to trigger channel opening.<ref>PMID:30250252</ref> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</SX> | </SX> | ||
| - | [[Category: | + | [[Category: Danio rerio]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Borgnia | + | [[Category: Borgnia MJ]] |
| - | [[Category: Borschel | + | [[Category: Borschel WF]] |
| - | [[Category: Hsu | + | [[Category: Hsu AL]] |
| - | [[Category: Lander | + | [[Category: Lander GC]] |
| - | [[Category: Lee | + | [[Category: Lee S-Y]] |
| - | [[Category: Wu | + | [[Category: Wu M]] |
| - | [[Category: Yin | + | [[Category: Yin Y]] |
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Current revision
Cryo-EM structure of the zebrafish TRPM2 channel in the presence of ADPR and Ca2+
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Categories: Danio rerio | Large Structures | Borgnia MJ | Borschel WF | Hsu AL | Lander GC | Lee S-Y | Wu M | Yin Y
