6rn2

From Proteopedia

(Difference between revisions)

Current revision

ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-1

6rn2, resolution 6.20Å

Structural highlights

6rn2 is a 7 chain structure with sequence from Escherichia coli and Escherichia coli HVH 50 (4-2593475). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Electron Microscopy, Resolution 6.2Å
Ligands:
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

AAA+ proteins form asymmetric hexameric rings that hydrolyze ATP and thread substrate proteins through a central channel via mobile substrate-binding pore loops. Understanding how ATPase and threading activities are regulated and intertwined is key to understanding the AAA+ protein mechanism. We studied the disaggregase ClpB, which contains tandem ATPase domains (AAA1, AAA2) and shifts between low and high ATPase and threading activities. Coiled-coil M-domains repress ClpB activity by encircling the AAA1 ring. Here, we determine the mechanism of ClpB activation by comparing ATPase mechanisms and cryo-EM structures of ClpB wild-type and a constitutively active ClpB M-domain mutant. We show that ClpB activation reduces ATPase cooperativity and induces a sequential mode of ATP hydrolysis in the AAA2 ring, the main ATPase motor. AAA1 and AAA2 rings do not work synchronously but in alternating cycles. This ensures high grip, enabling substrate threading via a processive, rope-climbing mechanism.

Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor.,Deville C, Franke K, Mogk A, Bukau B, Saibil HR Cell Rep. 2019 Jun 18;27(12):3433-3446.e4. doi: 10.1016/j.celrep.2019.05.075. PMID:31216466^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Deville C, Franke K, Mogk A, Bukau B, Saibil HR. Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor. Cell Rep. 2019 Jun 18;27(12):3433-3446.e4. doi: 10.1016/j.celrep.2019.05.075. PMID:31216466 doi:http://dx.doi.org/10.1016/j.celrep.2019.05.075

1 Structural highlights
2 Publication Abstract from PubMed
3 See Also
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6rn2"

Categories: Escherichia coli | Large Structures | Deville C | Saibil HR

@@ Line 3: / Line 3: @@
 <SX load='6rn2' size='340' side='right' viewer='molstar' caption='[[6rn2]], [[Resolution|resolution]] 6.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6rn2]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895] and [http://en.wikipedia.org/wiki/Escherichia_coli_hvh_50_(4-2593475) Escherichia coli hvh 50 (4-2593475)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RN2 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RN2 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6rn2]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_HVH_50_(4-2593475) Escherichia coli HVH 50 (4-2593475)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RN2 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6.2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6qs6|6qs6]], [[6qs7|6qs7]], [[6qs8|6qs8]], [[6qs4|6qs4]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">clpB, G723_01503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280998 Escherichia coli HVH 50 (4-2593475)])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rn2 OCA], [https://pdbe.org/6rn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rn2 RCSB], [https://www.ebi.ac.uk/pdbsum/6rn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rn2 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6rn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rn2 OCA], [http://pdbe.org/6rn2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rn2 RCSB], [http://www.ebi.ac.uk/pdbsum/6rn2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rn2 ProSAT]</span></td></tr>
 </table>
-== Function ==
-[[http://www.uniprot.org/uniprot/V2RJ62_ECOLX V2RJ62_ECOLX]] Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE.[RuleBase:RU362034]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 17: @@
 </div>
 <div class="pdbe-citations 6rn2" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[3D structures of ClpB|3D structures of ClpB]]
 == References ==
 <references/>
 __TOC__
 </SX>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
 [[Category: Large Structures]]
-[[Category: Deville, C]]
+[[Category: Deville C]]
-[[Category: Saibil, H R]]
+[[Category: Saibil HR]]
-[[Category: Aaa]]
-[[Category: Chaperone]]
-[[Category: Disaggregase]]
-[[Category: Proteostasis]]

6rn2

From Proteopedia

Current revision

ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-1

Structural highlights

Publication Abstract from PubMed

See Also

References

Contents

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