6roi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:13, 9 April 2025) (edit) (undo)
 
Line 3: Line 3:
<SX load='6roi' size='340' side='right' viewer='molstar' caption='[[6roi]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
<SX load='6roi' size='340' side='right' viewer='molstar' caption='[[6roi]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6roi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ROI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ROI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6roi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ROI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ROI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.7&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BFD:ASPARTATE+BERYLLIUM+TRIFLUORIDE'>BFD</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2Y5:(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL+(5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE'>2Y5</scene>, <scene name='pdbligand=BFD:ASPARTATE+BERYLLIUM+TRIFLUORIDE'>BFD</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DRS2, YAL026C, FUN38 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast]), CDC50, YCR094W, YCR94W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6roi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6roi OCA], [https://pdbe.org/6roi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6roi RCSB], [https://www.ebi.ac.uk/pdbsum/6roi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6roi ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/P-type_phospholipid_transporter P-type phospholipid transporter], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=7.6.2.1 7.6.2.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6roi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6roi OCA], [http://pdbe.org/6roi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6roi RCSB], [http://www.ebi.ac.uk/pdbsum/6roi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6roi ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ATC3_YEAST ATC3_YEAST]] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly. [[http://www.uniprot.org/uniprot/CDC50_YEAST CDC50_YEAST]] Required for polarized cell growth.
+
[https://www.uniprot.org/uniprot/ATC3_YEAST ATC3_YEAST] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</SX>
</SX>
-
[[Category: Baker's yeast]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: P-type phospholipid transporter]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Ash, M R]]
+
[[Category: Ash MR]]
-
[[Category: Boesen, T]]
+
[[Category: Boesen T]]
-
[[Category: Dieudonne, T]]
+
[[Category: Dieudonne T]]
-
[[Category: Januliene, D]]
+
[[Category: Januliene D]]
-
[[Category: Karlsen, J L]]
+
[[Category: Karlsen JL]]
-
[[Category: Kuhlbrandt, W]]
+
[[Category: Kuhlbrandt W]]
-
[[Category: Lenoir, G]]
+
[[Category: Lenoir G]]
-
[[Category: Lyons, J A]]
+
[[Category: Lyons JA]]
-
[[Category: Moeller, A]]
+
[[Category: Moeller A]]
-
[[Category: Montigny, C]]
+
[[Category: Montigny C]]
-
[[Category: Nissen, P]]
+
[[Category: Nissen P]]
-
[[Category: Timcenko, M]]
+
[[Category: Timcenko M]]
-
[[Category: Ulstrup, J J]]
+
[[Category: Ulstrup JJ]]
-
[[Category: Lipid flippase]]
+
-
[[Category: Lipid transport]]
+
-
[[Category: P-type atpase]]
+
-
[[Category: Ps transport]]
+

Current revision

Cryo-EM structure of the partially activated Drs2p-Cdc50p

6roi, resolution 3.70Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools