6xu4
From Proteopedia
(Difference between revisions)
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==Crystal structure of the genetically-encoded FGCaMP calcium indicator in its calcium-bound state== | ==Crystal structure of the genetically-encoded FGCaMP calcium indicator in its calcium-bound state== | ||
| - | <StructureSection load='6xu4' size='340' side='right'caption='[[6xu4]]' scene=''> | + | <StructureSection load='6xu4' size='340' side='right'caption='[[6xu4]], [[Resolution|resolution]] 3.18Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XU4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XU4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6xu4]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/A._niger A. niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XU4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XU4 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xu4 OCA], [http://pdbe.org/6xu4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xu4 RCSB], [http://www.ebi.ac.uk/pdbsum/6xu4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xu4 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xu4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xu4 OCA], [http://pdbe.org/6xu4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xu4 RCSB], [http://www.ebi.ac.uk/pdbsum/6xu4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xu4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Genetically encoded calcium indicators (GECIs) have become a widespread tool for the visualization of neuronal activity. As compared to popular GCaMP GECIs, the FGCaMP indicator benefits from calmodulin and M13-peptide from the fungi Aspergillus niger and Aspergillus fumigatus, which prevent its interaction with the intracellular environment. However, FGCaMP exhibits a two-phase fluorescence behavior with the variation of calcium ion concentration, has moderate sensitivity in neurons (as compared to the GCaMP6s indicator), and has not been fully characterized in vitro and in vivo. To address these limitations, we developed an enhanced version of FGCaMP, called FGCaMP7. FGCaMP7 preserves the ratiometric phenotype of FGCaMP, with a 3.1-fold larger ratiometric dynamic range in vitro. FGCaMP7 demonstrates 2.7- and 8.7-fold greater photostability compared to mEGFP and mTagBFP2 fluorescent proteins in vitro, respectively. The ratiometric response of FGCaMP7 is 1.6- and 1.4-fold higher, compared to the intensiometric response of GCaMP6s, in non-stimulated and stimulated neuronal cultures, respectively. We reveal the inertness of FGCaMP7 to the intracellular environment of HeLa cells using its truncated version with a deleted M13-like peptide; in contrast to the similarly truncated variant of GCaMP6s. We characterize the crystal structure of the parental FGCaMP indicator. Finally, we test the in vivo performance of FGCaMP7 in mouse brain using a two-photon microscope and an NVista miniscope; and in zebrafish using two-color ratiometric confocal imaging. | ||
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| + | FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity.,Barykina NV, Sotskov VP, Gruzdeva AM, Wu YK, Portugues R, Subach OM, Chefanova ES, Plusnin VV, Ivashkina OI, Anokhin KV, Vlaskina AV, Korzhenevskiy DA, Nikolaeva AY, Boyko KM, Rakitina TV, Varizhuk AM, Pozmogova GE, Subach FV Int J Mol Sci. 2020 Apr 24;21(8). pii: ijms21083012. doi: 10.3390/ijms21083012. PMID:32344594<ref>PMID:32344594</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6xu4" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: A. niger]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Barykina | + | [[Category: Barykina, N V]] |
| - | [[Category: Boyko | + | [[Category: Boyko, K M]] |
| - | [[Category: Korzhenevskiy | + | [[Category: Korzhenevskiy, D A]] |
| - | [[Category: Nikolaeva | + | [[Category: Nikolaeva, A Y]] |
| - | [[Category: Subach | + | [[Category: Subach, F V]] |
| - | [[Category: Subach | + | [[Category: Subach, O M]] |
| + | [[Category: Calcium indicator]] | ||
| + | [[Category: Calcium sensor]] | ||
| + | [[Category: Fgcamp]] | ||
| + | [[Category: Florescent protein]] | ||
| + | [[Category: Fluorescent protein]] | ||
| + | [[Category: Genetically encoded]] | ||
| + | [[Category: Troponin]] | ||
Revision as of 20:51, 28 October 2020
Crystal structure of the genetically-encoded FGCaMP calcium indicator in its calcium-bound state
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