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== Structural highlights and mechanism == | == Structural highlights and mechanism == | ||
- | The MCU is a dimer of dimers, described as tetrameric truncated pyramid. The uniporter has only a single strong binding site located in the selectivity pore with specificity for [https://en.wikipedia.org/wiki/Calcium_signaling Calcium], near the surface of the inner mitochondrial membrane. <ref name="Fan C"> DOI: 10.1038/s41586-018-0330-9</ref> | + | The MCU is a <scene name='83/837230/Ntermsymmetry/1'>dimer of dimers</scene>, described as <scene name='83/837230/Pyramid/2'>tetrameric truncated pyramid</scene>. The uniporter has only a single strong binding site located in the selectivity pore with specificity for [https://en.wikipedia.org/wiki/Calcium_signaling Calcium], near the surface of the inner mitochondrial membrane. <ref name="Fan C"> DOI: 10.1038/s41586-018-0330-9</ref> The Calcium from the cytoplasm enters the mitochondrial inner membrane space through the mitochondrial membrane and is passed to the mitochondrial matrix via the MCU (figure 2). The transmembrane domain opens to the surface of the inner mitochondrial membrane, while the soluble domain, the coiled coil and the N-terminal domain reside inside the inner mitochondrial membrane, opening to the mitochondrial matrix. [[Image:structure.png|300 px|right|thumb|Figure 2: structure of mitochondrial calcium uniporter colored by functional domain designed in [http://www.pymol.org/ PyMol]. The transmembrane domain is highlighted salmon, the matrix in light cyan, coiled coil in dark violet, and the N-Terminal Domain in slate blue. [https://en.wikipedia.org/wiki/Protein_Data_Bank] [https://www.rcsb.org/structure/6DT0 6DT0] Each domain has a different functional role]] |
===Transmembrane Domain=== | ===Transmembrane Domain=== | ||
- | The <scene name='83/837230/Transmembrane_domain/3'>transmembrane domain</scene> is on the [https://en.wikipedia.org/wiki/Mitochondrion#Structure inner mitochondrial membrane] open to the inner membrane space. The small pore, highly specific for calcium binding is located in <scene name='83/837230/Tm2/1'>transmembrane 2</scene> (TM2) while <scene name='83/837230/Transmembrane_1/2'>transmembrane 1</scene> (TM1) surrounds the pore. The transmembrane domain exhibits four fold rotational symmetry. | + | The <scene name='83/837230/Transmembrane_domain/3'>transmembrane domain</scene> is on the [https://en.wikipedia.org/wiki/Mitochondrion#Structure inner mitochondrial membrane] open to the inner membrane space. The small pore, highly specific for calcium binding is located in <scene name='83/837230/Tm2/1'>transmembrane 2</scene> (TM2) while <scene name='83/837230/Transmembrane_1/2'>transmembrane 1</scene> (TM1) surrounds the pore. The transmembrane domain exhibits four fold rotational symmetry. |
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+ | ===Selectivity Filter=== | ||
+ | The <scene name='83/832933/Selectivity_filter/3'>selectivity filter</scene> contains <scene name='83/832933/Glu_residues_all/1'>Glu358</scene>, <scene name='83/832933/Trp354/1'>Trp354</scene>, and <scene name='83/832933/Pro359/1'>Pro359</scene> to allow calcium to pass through the uniporter. The carboxylate oxygen of the <scene name='83/832933/Glu_358/4'>Glu358</scene> side chains draw in the positive calcium ion. The <scene name='83/832933/Diameter/2'>diameter</scene> of the carboxyl ring is about 4Å, allowing only a dehydrated Ca2+ ion to bind. Trp38, which is directly next to the Glu residues, stabilizes the carbonyl side chains through <scene name='83/832933/H_bond_trp354_glu358/3'>hydrogen bonding</scene> and anion pi interactions. These Trp residues also form stacking interactions with Pro359, which orientate the Glu carboxyl side chains towards the middle of the pore to interact with Ca2+ ions. <ref name=”Yoo”>PMID:29954988</ref> Approximately one helical turn below the glutamate ring of the selectivity filter, there is a tyrosine ring coming a 12Å wide pore allowing high conductivity. <ref name="Fan C" /> The wider opening allows calcium to rehydrate once they pass the selectivity pore. | ||
[http://www.rcsb.org/structure/6DT0 Calcium Uniporter Structure] | [http://www.rcsb.org/structure/6DT0 Calcium Uniporter Structure] | ||
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+ | ===Soluble Domain=== | ||
+ | The <scene name='83/837230/Coiled_coil/3'>coiled coil</scene> is the first subsection of the soluble domain, which resides in the inner mitochondrial membrane. The coiled coil functions as the joints of the uniporter, providing flexibility to promote transport of Calcium ions down their concentration gradient.<ref name="Fan C" /> The junction between the transmembrane domain and the coiled coil's flexibility can be attributed to the disordered packing between subunits; subunits A and C adopt different conformations than the B and D subunits, although they superimpose well.<ref name="Fan C" /> [[Image:Nterm.png|200 px|left|thumb|Symmetry and organization of subunits from looking down into the uniporter from the inner mitochondrial membrane[https://en.wikipedia.org/wiki/Protein_Data_Bank] [https://www.rcsb.org/structure/6DT0 6DT0]]]When calcium binds to the selectivity pore, the coiled coil swings approximately 8° around its end near the <scene name='83/837230/Nterm/2'>N-Terminal Domain</scene>. This movement propagates to the top of the transmembrane domain, where the pore is located, about 85 amperes away. The largest displacement triggered by the movement of the coiled coil is in the transmembrane domain, where the coil bends 20°, moving the transmembrane domain further apart. The N-Terminal domain (NTD) is involved in calcium condition. Reorganization in the NTD due to shifts in the coiled coil switch subunits to alter membrane packing causing the interactions between the tyrosines and transmembrane helices. This propagation facilitates a rotamer switch between one pair of tyrosine controlling calcium flow through the pore. The soluble domain is wider than the transmembrane domain, allowing calcium ions to rehydrate and increasing the conductivity of ions through the uniporter into the mitochondrial matrix.<ref name="Fan C" /> | ||
== Disease Links== | == Disease Links== |
Revision as of 02:45, 21 April 2020
Mitochondrial Calcium Uniporter
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References
- ↑ 1.0 1.1 1.2 Giorgi C, Marchi S, Pinton P. The machineries, regulation and cellular functions of mitochondrial calcium. Nat Rev Mol Cell Biol. 2018 Nov;19(11):713-730. doi: 10.1038/s41580-018-0052-8. PMID:30143745 doi:http://dx.doi.org/10.1038/s41580-018-0052-8
- ↑ 2.0 2.1 2.2 2.3 2.4 Fan C, Fan M, Orlando BJ, Fastman NM, Zhang J, Xu Y, Chambers MG, Xu X, Perry K, Liao M, Feng L. X-ray and cryo-EM structures of the mitochondrial calcium uniporter. Nature. 2018 Jul 11. pii: 10.1038/s41586-018-0330-9. doi:, 10.1038/s41586-018-0330-9. PMID:29995856 doi:http://dx.doi.org/10.1038/s41586-018-0330-9
- ↑ Yoo J, Wu M, Yin Y, Herzik MA Jr, Lander GC, Lee SY. Cryo-EM structure of a mitochondrial calcium uniporter. Science. 2018 Jun 28. pii: science.aar4056. doi: 10.1126/science.aar4056. PMID:29954988 doi:http://dx.doi.org/10.1126/science.aar4056