6stf
From Proteopedia
(Difference between revisions)
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==Human Rab8a phosphorylated at Ser111 in complex with GDP== | ==Human Rab8a phosphorylated at Ser111 in complex with GDP== | ||
- | <StructureSection load='6stf' size='340' side='right'caption='[[6stf]]' scene=''> | + | <StructureSection load='6stf' size='340' side='right'caption='[[6stf]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6STF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6STF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6stf]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6STF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6STF FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6stf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6stf OCA], [http://pdbe.org/6stf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6stf RCSB], [http://www.ebi.ac.uk/pdbsum/6stf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6stf ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
+ | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4lhv|4lhv]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RAB8A, MEL, RAB8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6stf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6stf OCA], [http://pdbe.org/6stf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6stf RCSB], [http://www.ebi.ac.uk/pdbsum/6stf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6stf ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/RAB8A_HUMAN RAB8A_HUMAN]] May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.<ref>PMID:20890297</ref> <ref>PMID:21282656</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Loss of function mutations in the PINK1 kinase are causal for autosomal recessive Parkinson's disease (PD) whilst gain of function mutations in the LRRK2 kinase cause autosomal dominant PD. PINK1 indirectly regulates the phosphorylation of a subset of Rab GTPases at a conserved Serine111 (Ser111) residue within the SF3 motif. Using genetic code expansion technologies we have produced stoichiometric Ser111-phosphorylated Rab8A revealing impaired interactions with its cognate guanine nucleotide exchange factor (GEF) and GTPase activating protein (GAP). In a screen for Rab8A kinases we identify TAK1 and MST3 kinases that can efficiently phosphorylate the Switch II residue Threonine72 (Thr72) in a similar manner as LRRK2 in vitro. Strikingly we demonstrate that Ser111 phosphorylation negatively regulates the ability of LRRK2 but not MST3 or TAK1 to phosphorylate Thr72 of recombinant nucleotide-bound Rab8A in vitro and demonstrate an interplay of PINK1- and LRRK2-mediated phosphorylation of Rab8A in transfected HEK293 cells. Finally, we present the crystal structure of Ser111-phosphorylated Rab8A and NMR structure of Ser111-phosphorylated Rab1B. The structures reveal that the phosphorylated SF3 motif does not induce any major changes, but may interfere with effector-Switch II interactions through intramolecular H-bond formation and/or charge effects with Arg79. Overall, we demonstrate antagonistic regulation between PINK1-dependent Ser111 phosphorylation and LRRK2-mediated Thr72 phosphorylation of Rab8A indicating a potential crosstalk between PINK1-regulated mitochondrial homeostasis and LRRK2 signalling that requires further investigation in vivo. | ||
+ | |||
+ | PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2 mediated phosphorylation at Threonine72.,Vieweg S, Mulholland K, Brauning B, Kacharia N, Lai YC, Toth R, Singh PK, Volpi I, Sattler M, Groll M, Itzen A, Muqit MMK Biochem J. 2020 Mar 30. pii: 222508. doi: 10.1042/BCJ20190664. PMID:32227113<ref>PMID:32227113</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6stf" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Human]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Braeuning B]] | + | [[Category: Braeuning, B]] |
- | [[Category: Groll M]] | + | [[Category: Groll, M]] |
- | [[Category: Itzen A]] | + | [[Category: Itzen, A]] |
- | [[Category: Kachariya N]] | + | [[Category: Kachariya, N]] |
- | [[Category: Lai Y]] | + | [[Category: Lai, Y]] |
- | [[Category: Mulholland K]] | + | [[Category: Mulholland, K]] |
- | [[Category: Muqit | + | [[Category: Muqit, M M.K]] |
- | [[Category: Sattler M]] | + | [[Category: Sattler, M]] |
- | [[Category: Toth R]] | + | [[Category: Toth, R]] |
- | [[Category: Vieweg S]] | + | [[Category: Vieweg, S]] |
+ | [[Category: Parkinson disease]] | ||
+ | [[Category: Phosphorylation]] | ||
+ | [[Category: Sf3 motif]] | ||
+ | [[Category: Signaling protein]] | ||
+ | [[Category: Small g-protein]] |
Revision as of 06:05, 20 May 2020
Human Rab8a phosphorylated at Ser111 in complex with GDP
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