6l9c

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==Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4==
==Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4==
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<StructureSection load='6l9c' size='340' side='right'caption='[[6l9c]]' scene=''>
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<StructureSection load='6l9c' size='340' side='right'caption='[[6l9c]], [[Resolution|resolution]] 1.14&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L9C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L9C FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6l9c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L9C OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L9C FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l9c OCA], [http://pdbe.org/6l9c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l9c RCSB], [http://www.ebi.ac.uk/pdbsum/6l9c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l9c ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASA:ASPARTIC+ALDEHYDE'>ASA</scene>, <scene name='pdbligand=E9C:'>E9C</scene>, <scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l9c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l9c OCA], [http://pdbe.org/6l9c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l9c RCSB], [http://www.ebi.ac.uk/pdbsum/6l9c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l9c ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recent advances in neutron crystallographic studies have provided structural bases for quantum behaviors of protons observed in enzymatic reactions. Thus, we resolved the neutron crystal structure of a bacterial copper (Cu) amine oxidase (CAO), which contains a prosthetic Cu ion and a protein-derived redox cofactor, topa quinone (TPQ). We solved hitherto unknown structures of the active site, including a keto/enolate equilibrium of the cofactor with a nonplanar quinone ring, unusual proton sharing between the cofactor and the catalytic base, and metal-induced deprotonation of a histidine residue that coordinates to the Cu. Our findings show a refined active-site structure that gives detailed information on the protonation state of dissociable groups, such as the quinone cofactor, which are critical for catalytic reactions.
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Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.,Murakawa T, Kurihara K, Shoji M, Shibazaki C, Sunami T, Tamada T, Yano N, Yamada T, Kusaka K, Suzuki M, Shigeta Y, Kuroki R, Hayashi H, Yano T, Tanizawa K, Adachi M, Okajima T Proc Natl Acad Sci U S A. 2020 May 5. pii: 1922538117. doi:, 10.1073/pnas.1922538117. PMID:32371483<ref>PMID:32371483</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6l9c" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Adachi M]]
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[[Category: Primary-amine oxidase]]
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[[Category: Hayashi H]]
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[[Category: Adachi, M]]
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[[Category: Kurihara K]]
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[[Category: Hayashi, H]]
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[[Category: Kuroki R]]
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[[Category: Kurihara, K]]
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[[Category: Kusaka K]]
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[[Category: Kuroki, R]]
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[[Category: Murakawa T]]
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[[Category: Kusaka, K]]
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[[Category: Okajima T]]
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[[Category: Murakawa, T]]
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[[Category: Shibazaki C]]
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[[Category: Okajima, T]]
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[[Category: Shigeta Y]]
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[[Category: Shibazaki, C]]
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[[Category: Shoji M]]
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[[Category: Shigeta, Y]]
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[[Category: Sunami T]]
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[[Category: Shoji, M]]
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[[Category: Suzuki M]]
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[[Category: Sunami, T]]
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[[Category: Tamada T]]
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[[Category: Suzuki, M]]
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[[Category: Tanizawa K]]
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[[Category: Tamada, T]]
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[[Category: Yamada T]]
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[[Category: Tanizawa, K]]
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[[Category: Yano N]]
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[[Category: Yamada, T]]
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[[Category: Yano Y]]
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[[Category: Yano, N]]
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[[Category: Yano, Y]]
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[[Category: Copper amine oxidase]]
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[[Category: Oxidoreductase]]
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[[Category: Topaquinone]]
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[[Category: Tpq]]

Revision as of 06:00, 20 May 2020

Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4

PDB ID 6l9c

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