This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5etk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:23, 12 July 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5etk' size='340' side='right'caption='[[5etk]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
<StructureSection load='5etk' size='340' side='right'caption='[[5etk]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5etk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ETK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ETK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5etk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ETK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ETK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5RU:2-AZANYL-8-[(2-FLUOROPHENYL)METHYLSULFANYL]-1,9-DIHYDROPURIN-6-ONE'>5RU</scene>, <scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5etl|5etl]], [[5etm|5etm]], [[5etn|5etn]], [[5eto|5eto]], [[5etp|5etp]], [[5etq|5etq]], [[5etr|5etr]], [[5ets|5ets]], [[5ett|5ett]], [[5etv|5etv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5RU:2-AZANYL-8-[(2-FLUOROPHENYL)METHYLSULFANYL]-1,9-DIHYDROPURIN-6-ONE'>5RU</scene>, <scene name='pdbligand=APC:DIPHOSPHOMETHYLPHOSPHONIC+ACID+ADENOSYL+ESTER'>APC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">folK, b0142, JW0138 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5etk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5etk OCA], [https://pdbe.org/5etk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5etk RCSB], [https://www.ebi.ac.uk/pdbsum/5etk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5etk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_diphosphokinase 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.3 2.7.6.3] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5etk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5etk OCA], [http://pdbe.org/5etk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5etk RCSB], [http://www.ebi.ac.uk/pdbsum/5etk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5etk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HPPK_ECOLI HPPK_ECOLI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5etk" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5etk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[HPPK 3D structures|HPPK 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Dennis, M L]]
+
[[Category: Dennis ML]]
-
[[Category: Peat, T S]]
+
[[Category: Peat TS]]
-
[[Category: Swarbrick, J D]]
+
[[Category: Swarbrick JD]]
-
[[Category: Ampcpp]]
+
-
[[Category: Complex]]
+
-
[[Category: Inhibitor]]
+
-
[[Category: Pyrophosphokinase]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+

Current revision

E. coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase complexed with AMPCPP and inhibitor at 1.09 angstrom resolution

PDB ID 5etk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5etk"
Personal tools