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| <StructureSection load='5f6t' size='340' side='right'caption='[[5f6t]], [[Resolution|resolution]] 2.20Å' scene=''> | | <StructureSection load='5f6t' size='340' side='right'caption='[[5f6t]], [[Resolution|resolution]] 2.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5f6t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dorpe Dorpe]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5F6T FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5f6t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Doryteuthis_pealeii Doryteuthis pealeii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F6T FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.201Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ccm|2ccm]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cex ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1051067 DORPE])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6t OCA], [https://pdbe.org/5f6t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f6t RCSB], [https://www.ebi.ac.uk/pdbsum/5f6t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6t ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5f6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6t OCA], [http://pdbe.org/5f6t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f6t RCSB], [http://www.ebi.ac.uk/pdbsum/5f6t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6t ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/O76764_DORPE O76764_DORPE] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Dorpe]] | + | [[Category: Doryteuthis pealeii]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Chataigner, L]] | + | [[Category: Chataigner L]] |
- | [[Category: Coker, A R]] | + | [[Category: Coker AR]] |
- | [[Category: Cooper, J B]] | + | [[Category: Cooper JB]] |
- | [[Category: Erskine, P T]] | + | [[Category: Erskine PT]] |
- | [[Category: Guo, J]] | + | [[Category: Guo J]] |
- | [[Category: Wood, S P]] | + | [[Category: Wood SP]] |
- | [[Category: Calcium-binding protein]]
| + | |
- | [[Category: Ef-hand neuronal calcium signalling]]
| + | |
| Structural highlights
Function
O76764_DORPE
Publication Abstract from PubMed
Calexcitin was first identified in the marine snail Hermissenda crassicornis as a neuronal-specific protein that becomes upregulated and phosphorylated in associative learning. Calexcitin possesses four EF-hand motifs, but only the first three (EF-1 to EF-3) are involved in binding metal ions. Past work has indicated that under physiological conditions EF-1 and EF-2 bind Mg(2+) and Ca(2+), while EF-3 is likely to bind only Ca(2+). The fourth EF-hand is nonfunctional owing to a lack of key metal-binding residues. The aim of this study was to use a crystallographic approach to determine which of the three metal-binding sites of calexcitin is most readily replaced by exogenous metal ions, potentially shedding light on which of the EF-hands play a `sensory' role in neuronal calcium signalling. By co-crystallizing recombinant calexcitin with equimolar Gd(3+) in the presence of trace Ca(2+), EF-1 was shown to become fully occupied by Gd(3+) ions, while the other two sites remain fully occupied by Ca(2+). The structure of the Gd(3+)-calexcitin complex has been refined to an R factor of 21.5% and an Rfree of 30.4% at 2.2 A resolution. These findings suggest that EF-1 of calexcitin is the Ca(2+)-binding site with the lowest selectivity for Ca(2+), and the implications of this finding for calcium sensing in neuronal signalling pathways are discussed.
Binding of Gd(3+) to the neuronal signalling protein calexcitin identifies an exchangeable Ca(2+)-binding site.,Chataigner L, Guo J, Erskine PT, Coker AR, Wood SP, Gombos Z, Cooper JB Acta Crystallogr F Struct Biol Commun. 2016 Apr 1;72(Pt 4):276-81. doi:, 10.1107/S2053230X16003526. Epub 2016 Mar 16. PMID:27050260[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chataigner L, Guo J, Erskine PT, Coker AR, Wood SP, Gombos Z, Cooper JB. Binding of Gd(3+) to the neuronal signalling protein calexcitin identifies an exchangeable Ca(2+)-binding site. Acta Crystallogr F Struct Biol Commun. 2016 Apr 1;72(Pt 4):276-81. doi:, 10.1107/S2053230X16003526. Epub 2016 Mar 16. PMID:27050260 doi:http://dx.doi.org/10.1107/S2053230X16003526
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