This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ff7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:49, 19 July 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5ff7' size='340' side='right'caption='[[5ff7]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
<StructureSection load='5ff7' size='340' side='right'caption='[[5ff7]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ff7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Strp1 Strp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FF7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FF7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ff7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M1 Streptococcus pyogenes serotype M1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FF7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=G3H:GLYCERALDEHYDE-3-PHOSPHATE'>G3H</scene>, <scene name='pdbligand=G3P:SN-GLYCEROL-3-PHOSPHATE'>G3P</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.092&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lacD2, lacD.2, SPy_1919, M5005_Spy1635 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=301447 STRP1])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=G3H:GLYCERALDEHYDE-3-PHOSPHATE'>G3H</scene>, <scene name='pdbligand=G3P:SN-GLYCEROL-3-PHOSPHATE'>G3P</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose-bisphosphate_aldolase Tagatose-bisphosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.40 4.1.2.40] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ff7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ff7 OCA], [https://pdbe.org/5ff7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ff7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ff7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ff7 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ff7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ff7 OCA], [http://pdbe.org/5ff7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ff7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ff7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ff7 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LACD2_STRP1 LACD2_STRP1]
==See Also==
==See Also==
Line 15: Line 16:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Strp1]]
+
[[Category: Streptococcus pyogenes serotype M1]]
-
[[Category: Tagatose-bisphosphate aldolase]]
+
[[Category: Liotard B]]
-
[[Category: Liotard, B]]
+
[[Category: Low-Kam C]]
-
[[Category: Low-Kam, C]]
+
-
[[Category: Aldolase]]
+
-
[[Category: Class i]]
+
-
[[Category: Covalent intermediate]]
+
-
[[Category: Lyase]]
+
-
[[Category: Substrate]]
+

Current revision

Tagatose-1,6-bisphosphate aldolase from Streptococcus pyogenes in complex with DHAP and G3P

PDB ID 5ff7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools