5gin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:32, 2 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5gin' size='340' side='right'caption='[[5gin]], [[Resolution|resolution]] 3.31&Aring;' scene=''>
<StructureSection load='5gin' size='340' side='right'caption='[[5gin]], [[Resolution|resolution]] 3.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5gin]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GIN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GIN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5gin]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GIN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GIN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.308&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5gip|5gip]], [[5gio|5gio]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SULA_1947, SULB_1948, SULC_1946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091]), rpl7ae, SULA_1106, SULB_1107, SULC_1105 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091]), flpA, SSOP1_0970, SULA_1948, SULB_1949, SULC_1947 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gin OCA], [https://pdbe.org/5gin PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gin RCSB], [https://www.ebi.ac.uk/pdbsum/5gin PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gin ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gin OCA], [http://pdbe.org/5gin PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gin RCSB], [http://www.ebi.ac.uk/pdbsum/5gin PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gin ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0A0E3JUC9_SULSF A0A0E3JUC9_SULSF]] Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.[HAMAP-Rule:MF_00351] [[http://www.uniprot.org/uniprot/A0A0E3JZF7_SULSF A0A0E3JZF7_SULSF]] Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.[HAMAP-Rule:MF_00326]
+
[https://www.uniprot.org/uniprot/Q97ZH3_SACS2 Q97ZH3_SACS2]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 35091]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Lin, J]]
+
[[Category: Saccharolobus solfataricus]]
-
[[Category: Yang, Z]]
+
[[Category: Lin J]]
-
[[Category: Ye, K]]
+
[[Category: Yang Z]]
-
[[Category: 2'-o-methylation]]
+
[[Category: Ye K]]
-
[[Category: Guide rna]]
+
-
[[Category: Rnp]]
+
-
[[Category: Transferase-rna complex]]
+

Current revision

Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates

PDB ID 5gin

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5gin"
Personal tools