6ub8
From Proteopedia
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==Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI)== | ==Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI)== | ||
| - | <StructureSection load='6ub8' size='340' side='right'caption='[[6ub8]]' scene=''> | + | <StructureSection load='6ub8' size='340' side='right'caption='[[6ub8]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UB8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6UB8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ub8]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Aureobasidium_namibiae_cbs_147.97 Aureobasidium namibiae cbs 147.97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UB8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6UB8 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ub8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ub8 OCA], [http://pdbe.org/6ub8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ub8 RCSB], [http://www.ebi.ac.uk/pdbsum/6ub8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ub8 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">M436DRAFT_66913 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1043004 Aureobasidium namibiae CBS 147.97])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ub8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ub8 OCA], [http://pdbe.org/6ub8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ub8 RCSB], [http://www.ebi.ac.uk/pdbsum/6ub8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ub8 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The fundamental and assorted roles of beta-1,3-glucans in nature are underpinned on diverse chemistry and molecular structures, demanding sophisticated and intricate enzymatic systems for their processing. In this work, the selectivity and modes of action of a glycoside hydrolase family active on beta-1,3-glucans were systematically investigated combining sequence similarity network, phylogeny, X-ray crystallography, enzyme kinetics, mutagenesis and molecular dynamics. This family exhibits a minimalist and versatile (alpha/beta)-barrel scaffold, which can harbor distinguishing exo or endo modes of action, including an ancillary-binding site for the anchoring of triple-helical beta-1,3-glucans. The substrate binding occurs via a hydrophobic knuckle complementary to the canonical curved conformation of beta-1,3-glucans or through a substrate conformational change imposed by the active-site topology of some fungal enzymes. Together, these findings expand our understanding of the enzymatic arsenal of bacteria and fungi for the breakdown and modification of beta-1,3-glucans, which can be exploited for biotechnological applications. | ||
| + | |||
| + | Structural insights into beta-1,3-glucan cleavage by a glycoside hydrolase family.,Santos CR, Costa PACR, Vieira PS, Gonzalez SET, Correa TLR, Lima EA, Mandelli F, Pirolla RAS, Domingues MN, Cabral L, Martins MP, Cordeiro RL, Junior AT, Souza BP, Prates ET, Gozzo FC, Persinoti GF, Skaf MS, Murakami MT Nat Chem Biol. 2020 May 25. pii: 10.1038/s41589-020-0554-5. doi:, 10.1038/s41589-020-0554-5. PMID:32451508<ref>PMID:32451508</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6ub8" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Aureobasidium namibiae cbs 147 97]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Cordeiro | + | [[Category: Cordeiro, R L]] |
| - | [[Category: Domingues | + | [[Category: Domingues, M N]] |
| - | [[Category: Murakami | + | [[Category: Murakami, M T]] |
| - | [[Category: Santos | + | [[Category: Santos, C R]] |
| - | [[Category: Tomazini A]] | + | [[Category: Tomazini, A]] |
| - | [[Category: Vieira | + | [[Category: Vieira, P S]] |
| + | [[Category: Carbohydrate]] | ||
| + | [[Category: Glycosyl hydrolase]] | ||
| + | [[Category: Hydrolase]] | ||
Revision as of 06:43, 10 June 2020
Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium namibiae (AnGH128_VI)
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