5h45

From Proteopedia

(Difference between revisions)

Revision as of 07:23, 9 August 2023

Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms

Structural highlights

5h45 is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.7Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5SKV2_THET8 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.[RuleBase:RU003555] Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.[HAMAP-Rule:MF_01498]

Publication Abstract from PubMed

Homologous recombination (HR) plays an essential role in the maintenance of genome integrity. RecA/Rad51 paralogs have been recognized as an important factor of HR. Among them, only one bacterial RecA/Rad51 paralog, RadA, is involved in HR as an accessory factor of RecA recombinase. RadA has a unique Lon protease-like domain (LonC) at its C terminus, in addition to a RecA-like ATPase domain. Unlike Lon protease, RadA's LonC domain does not show protease activity but is still essential for RadA-mediated DNA repair. Reconciling these two facts has been difficult because RadA's tertiary structure and molecular function are unknown. Here, we describe the hexameric ring structure of RadA's LonC domain, as determined by X-ray crystallography. The structure revealed the two positively charged regions unique to the LonC domain of RadA are located at the intersubunit cleft and the central hole of a hexameric ring. Surprisingly, a functional domain analysis demonstrated the LonC domain of RadA binds DNA, with site-directed mutagenesis showing that the two positively charged regions are critical for this DNA-binding activity. Interestingly, only the intersubunit cleft was required for the DNA-dependent stimulation of ATPase activity of RadA, and at least the central hole was essential for DNA repair function. Our data provide the structural and functional features of the LonC domain and their function in RadA-mediated DNA repair.

The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.,Inoue M, Fukui K, Fujii Y, Nakagawa N, Yano T, Kuramitsu S, Masui R J Biol Chem. 2017 Jun 9;292(23):9801-9814. doi: 10.1074/jbc.M116.770180. Epub, 2017 Apr 21. PMID:28432121^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Inoue M, Fukui K, Fujii Y, Nakagawa N, Yano T, Kuramitsu S, Masui R. The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair. J Biol Chem. 2017 Jun 9;292(23):9801-9814. doi: 10.1074/jbc.M116.770180. Epub, 2017 Apr 21. PMID:28432121 doi:http://dx.doi.org/10.1074/jbc.M116.770180

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5h45"

@@ Line 3: / Line 3: @@
 <StructureSection load='5h45' size='340' side='right'caption='[[5h45]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5h45]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H45 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5H45 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5h45]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5H45 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5h45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h45 OCA], [http://pdbe.org/5h45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h45 RCSB], [http://www.ebi.ac.uk/pdbsum/5h45 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h45 ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5h45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h45 OCA], [https://pdbe.org/5h45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5h45 RCSB], [https://www.ebi.ac.uk/pdbsum/5h45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5h45 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/Q5SKV2_THET8 Q5SKV2_THET8]] DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.[RuleBase:RU003555]  Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.[HAMAP-Rule:MF_01498]
+[https://www.uniprot.org/uniprot/Q5SKV2_THET8 Q5SKV2_THET8] DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.[RuleBase:RU003555]  Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.[HAMAP-Rule:MF_01498]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 26: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Fujii, Y]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Fukui, K]]
+[[Category: Fujii Y]]
-[[Category: Inoue, M]]
+[[Category: Fukui K]]
-[[Category: Kuramitsu, S]]
+[[Category: Inoue M]]
-[[Category: Masui, R]]
+[[Category: Kuramitsu S]]
-[[Category: Nakagawa, N]]
+[[Category: Masui R]]
-[[Category: Yano, T]]
+[[Category: Nakagawa N]]
-[[Category: Dna binding protein]]
+[[Category: Yano T]]
-[[Category: Ribosomal protein s5 domain 2-like fold]]

5h45

From Proteopedia

Revision as of 07:23, 9 August 2023

Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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