6wm5
From Proteopedia
(Difference between revisions)
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==Structure of a phosphatidylinositol-phosphate synthase (PIPS) from Mycobacterium kansasii== | ==Structure of a phosphatidylinositol-phosphate synthase (PIPS) from Mycobacterium kansasii== | ||
- | <StructureSection load='6wm5' size='340' side='right'caption='[[6wm5]]' scene=''> | + | <StructureSection load='6wm5' size='340' side='right'caption='[[6wm5]], [[Resolution|resolution]] 1.96Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WM5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WM5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6wm5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WM5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WM5 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wm5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wm5 OCA], [http://pdbe.org/6wm5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wm5 RCSB], [http://www.ebi.ac.uk/pdbsum/6wm5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wm5 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8K6:OCTADECANE'>8K6</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TCE:3,3,3-PHOSPHANETRIYLTRIPROPANOIC+ACID'>TCE</scene>, <scene name='pdbligand=XP4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE'>XP4</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MKAN_RS24880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wm5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wm5 OCA], [http://pdbe.org/6wm5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wm5 RCSB], [http://www.ebi.ac.uk/pdbsum/6wm5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wm5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | In mycobacteria, phosphatidylinositol (PI) acts as a common lipid anchor for key components of the cell wall, including the glycolipids phosphatidylinositol mannoside (PIM), lipomannan (LM) and lipoarabinomannan (LAM). Glycolipids in Mycobacterium tuberculosis, the causative agent of tuberculosis, are important virulence factors that modulate the host immune response. The identity-defining step in PI biosynthesis in prokaryotes, unique to mycobacteria and few other bacterial species, is the reaction between CDP-diacylglycerol and inositol-phosphate to yield phosphatidylinositol-phosphate, the immediate precursor to PI. This reaction is catalyzed by the CDP-alcohol phosphotransferase phosphatidylinositol-phosphate synthase (PIPS), an essential enzyme for mycobacterial viability. Here we present structures of PIPS from Mycobacterium kansasii (MkPIPS) with and without evidence of donor and acceptor substrate binding obtained using a crystal engineering approach. MkPIPS is 86% identical to the ortholog from Mycobacterium tuberculosis and catalytically active. Functional experiments guided by our structural results allowed us to further characterize the molecular determinants of substrate specificity and catalysis in a new mycobacterial species. This work provides a framework to strengthen our understanding of phosphatidylinositol-phosphate biosynthesis in the context of mycobacterial pathogens. | ||
+ | |||
+ | Structural and Functional Characterization of Phosphatidylinositol-Phosphate Biosynthesis in Mycobacteria.,Belcher Dufrisne M, Jorge CD, Timoteo CG, Petrou VI, Ashraf KU, Banerjee S, Clarke OB, Santos H, Mancia F J Mol Biol. 2020 May 7. pii: S0022-2836(20)30330-2. doi:, 10.1016/j.jmb.2020.04.028. PMID:32389689<ref>PMID:32389689</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6wm5" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Arcfu]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Ashraf | + | [[Category: Ashraf, K U]] |
- | [[Category: Banerjee S]] | + | [[Category: Banerjee, S]] |
- | [[Category: | + | [[Category: Clarke, O B]] |
- | [[Category: | + | [[Category: Dufrisne, M Belcher]] |
- | [[Category: Jorge | + | [[Category: Jorge, C D]] |
- | [[Category: Mancia F]] | + | [[Category: Mancia, F]] |
- | [[Category: Petrou | + | [[Category: NYCOMPS, New York Consortium on Membrane Protein Structure]] |
- | [[Category: Santos H]] | + | [[Category: Petrou, V I]] |
- | [[Category: Timoteo | + | [[Category: Santos, H]] |
+ | [[Category: Timoteo, C G]] | ||
+ | [[Category: Cdp-alcohol phosphotransferase]] | ||
+ | [[Category: Membrane protein]] | ||
+ | [[Category: New york consortium on membrane protein structure]] | ||
+ | [[Category: Nycomp]] | ||
+ | [[Category: Psi-biology]] | ||
+ | [[Category: Structural genomic]] |
Revision as of 10:00, 9 September 2020
Structure of a phosphatidylinositol-phosphate synthase (PIPS) from Mycobacterium kansasii
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Categories: Arcfu | Large Structures | Ashraf, K U | Banerjee, S | Clarke, O B | Dufrisne, M Belcher | Jorge, C D | Mancia, F | NYCOMPS, New York Consortium on Membrane Protein Structure | Petrou, V I | Santos, H | Timoteo, C G | Cdp-alcohol phosphotransferase | Membrane protein | New york consortium on membrane protein structure | Nycomp | Psi-biology | Structural genomic