6z0o
From Proteopedia
(Difference between revisions)
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==Structure of Affimer-NP bound to Crimean-Congo Haemorrhagic Fever Virus Nucleocapsid Protein== | ==Structure of Affimer-NP bound to Crimean-Congo Haemorrhagic Fever Virus Nucleocapsid Protein== | ||
- | <StructureSection load='6z0o' size='340' side='right'caption='[[6z0o]]' scene=''> | + | <StructureSection load='6z0o' size='340' side='right'caption='[[6z0o]], [[Resolution|resolution]] 2.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0O OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z0O FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6z0o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cchfv Cchfv] and [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0O OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6Z0O FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0o OCA], [http://pdbe.org/6z0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z0o RCSB], [http://www.ebi.ac.uk/pdbsum/6z0o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0o ProSAT]</span></td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[4akl|4akl]]</div></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Np ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1980519 CCHFV])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6z0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0o OCA], [http://pdbe.org/6z0o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6z0o RCSB], [http://www.ebi.ac.uk/pdbsum/6z0o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0o ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is one of the most widespread medically important arboviruses, causing human infections that result in mortality rates of up to 60%. We describe the selection of a high-affinity small protein (Affimer-NP) that binds specifically to the nucleoprotein (NP) of CCHFV. We demonstrate the interference of Affimer-NP in the RNA-binding function of CCHFV NP using fluorescence anisotropy, and its inhibitory effects on CCHFV gene expression in mammalian cells using a mini-genome system. Solution of the crystallographic structure of the complex formed by these two molecules at 2.84 A resolution revealed the structural basis for this interference, with the Affimer-NP binding site positioned at the critical NP oligomerization interface. Finally, we validate the in vitro application of Affimer-NP for the development of enzyme-linked immunosorbent and lateral flow assays, presenting the first published point-of-care format test able to detect recombinant CCHFV NP in spiked human and animal sera. | ||
+ | |||
+ | Characterization and applications of a Crimean-Congo hemorrhagic fever virus nucleoprotein-specific Affimer: Inhibitory effects in viral replication and development of colorimetric diagnostic tests.,Alvarez-Rodriguez B, Tiede C, Hoste ACR, Surtees RA, Trinh CH, Slack GS, Chamberlain J, Hewson R, Fresco A, Sastre P, Tomlinson DC, Millner PA, Edwards TA, Barr JN PLoS Negl Trop Dis. 2020 Jun 3;14(6):e0008364. doi: 10.1371/journal.pntd.0008364., eCollection 2020 Jun. PMID:32492018<ref>PMID:32492018</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6z0o" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Cchfv]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Alvarez-Rodriguez B]] | + | [[Category: Synthetic construct sequences]] |
- | [[Category: Barr | + | [[Category: Alvarez-Rodriguez, B]] |
- | [[Category: Edwards | + | [[Category: Barr, J N]] |
- | [[Category: Tiede C]] | + | [[Category: Edwards, T A]] |
- | [[Category: Tomlinson D]] | + | [[Category: Tiede, C]] |
- | [[Category: Trinh C]] | + | [[Category: Tomlinson, D]] |
+ | [[Category: Trinh, C]] | ||
+ | [[Category: Affimer-np]] | ||
+ | [[Category: Anti-viral]] | ||
+ | [[Category: Complex]] | ||
+ | [[Category: Crimean-congo hemorrhagic fever virus nucleoprotein]] | ||
+ | [[Category: High-affinity]] | ||
+ | [[Category: Rna-binding]] | ||
+ | [[Category: Viral protein]] |
Revision as of 06:53, 9 December 2020
Structure of Affimer-NP bound to Crimean-Congo Haemorrhagic Fever Virus Nucleocapsid Protein
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