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| | <StructureSection load='6ryb' size='340' side='right'caption='[[6ryb]], [[Resolution|resolution]] 2.31Å' scene=''> | | <StructureSection load='6ryb' size='340' side='right'caption='[[6ryb]], [[Resolution|resolution]] 2.31Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6ryb]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila Legionella pneumophila subsp. pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RYB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RYB FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ryb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila Legionella pneumophila subsp. pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RYB FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D1H98_09620 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=91891 Legionella pneumophila subsp. pneumophila])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.315Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ryb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ryb OCA], [http://pdbe.org/6ryb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ryb RCSB], [http://www.ebi.ac.uk/pdbsum/6ryb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ryb ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ryb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ryb OCA], [https://pdbe.org/6ryb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ryb RCSB], [https://www.ebi.ac.uk/pdbsum/6ryb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ryb ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A3A6VNK6_LEGPN A0A3A6VNK6_LEGPN] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| | [[Category: Legionella pneumophila subsp. pneumophila]] | | [[Category: Legionella pneumophila subsp. pneumophila]] |
| - | [[Category: Donghyuk, S]] | + | [[Category: Donghyuk S]] |
| - | [[Category: Ivan, D]] | + | [[Category: Ivan D]] |
| - | [[Category: Cell invasion]]
| + | |
| - | [[Category: Deubiquitinase]]
| + | |
| - | [[Category: Legionella pneumophila]]
| + | |
| - | [[Category: Phosphoribose ubiquitination]]
| + | |
| - | [[Category: Toxin]]
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| Structural highlights
Function
A0A3A6VNK6_LEGPN
Publication Abstract from PubMed
The family of bacterial SidE enzymes catalyzes non-canonical phosphoribosyl-linked (PR) serine ubiquitination and promotes infectivity of Legionella pneumophila. Here, we describe identification of two bacterial effectors that reverse PR ubiquitination and are thus named deubiquitinases for PR ubiquitination (DUPs; DupA and DupB). Structural analyses revealed that DupA and SidE ubiquitin ligases harbor a highly homologous catalytic phosphodiesterase (PDE) domain. However, unlike SidE ubiquitin ligases, DupA displays increased affinity to PR-ubiquitinated substrates, which allows DupA to cleave PR ubiquitin from substrates. Interfering with DupA-ubiquitin binding switches its activity toward SidE-type ligase. Given the high affinity of DupA to PR-ubiquitinated substrates, we exploited a catalytically inactive DupA mutant to trap and identify more than 180 PR-ubiquitinated host proteins in Legionella-infected cells. Proteins involved in endoplasmic reticulum (ER) fragmentation and membrane recruitment to Legionella-containing vacuoles (LCV) emerged as major SidE targets. The global map of PR-ubiquitinated substrates provides critical insights into host-pathogen interactions during Legionella infection.
Regulation of Phosphoribosyl-Linked Serine Ubiquitination by Deubiquitinases DupA and DupB.,Shin D, Mukherjee R, Liu Y, Gonzalez A, Bonn F, Liu Y, Rogov VV, Heinz M, Stolz A, Hummer G, Dotsch V, Luo ZQ, Bhogaraju S, Dikic I Mol Cell. 2020 Jan 2;77(1):164-179.e6. doi: 10.1016/j.molcel.2019.10.019. Epub, 2019 Nov 12. PMID:31732457[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Shin D, Mukherjee R, Liu Y, Gonzalez A, Bonn F, Liu Y, Rogov VV, Heinz M, Stolz A, Hummer G, Dotsch V, Luo ZQ, Bhogaraju S, Dikic I. Regulation of Phosphoribosyl-Linked Serine Ubiquitination by Deubiquitinases DupA and DupB. Mol Cell. 2020 Jan 2;77(1):164-179.e6. doi: 10.1016/j.molcel.2019.10.019. Epub, 2019 Nov 12. PMID:31732457 doi:http://dx.doi.org/10.1016/j.molcel.2019.10.019
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