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| <StructureSection load='5hqx' size='340' side='right'caption='[[5hqx]], [[Resolution|resolution]] 2.05Å' scene=''> | | <StructureSection load='5hqx' size='340' side='right'caption='[[5hqx]], [[Resolution|resolution]] 2.05Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5hqx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HQX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5HQX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hqx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HQX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HQX FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDZ:1-[2-(2-HYDROXYETHYL)PHENYL]-3-(1,2,3-THIADIAZOL-5-YL)UREA'>EDZ</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4oal|4oal]], [[4o95|4o95]], [[5hmr|5hmr]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDZ:1-[2-(2-HYDROXYETHYL)PHENYL]-3-(1,2,3-THIADIAZOL-5-YL)UREA'>EDZ</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CKX4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hqx OCA], [https://pdbe.org/5hqx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hqx RCSB], [https://www.ebi.ac.uk/pdbsum/5hqx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hqx ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytokinin_dehydrogenase Cytokinin dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.99.12 1.5.99.12] </span></td></tr> | + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5hqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hqx OCA], [http://pdbe.org/5hqx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hqx RCSB], [http://www.ebi.ac.uk/pdbsum/5hqx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hqx ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/E3T1W8_MAIZE E3T1W8_MAIZE] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Cytokinin dehydrogenase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Maize]] | + | [[Category: Zea mays]] |
- | [[Category: Briozzo, P]] | + | [[Category: Briozzo P]] |
- | [[Category: Koncitikova, R]] | + | [[Category: Koncitikova R]] |
- | [[Category: Kopecny, D]] | + | [[Category: Kopecny D]] |
- | [[Category: Cytokinin degradation]]
| + | |
- | [[Category: Flavoenzyme]]
| + | |
- | [[Category: Oxidase/dehydrogenase]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Rossmann fold]]
| + | |
| Structural highlights
Function
E3T1W8_MAIZE
Publication Abstract from PubMed
KEY MESSAGE: Two new TDZ derivatives (HETDZ and 3FMTDZ) are very potent inhibitors of CKX and are promising candidates for in vivo studies. Cytokinin hormones regulate a wide range of essential processes in plants. Thidiazuron (N-phenyl-N'-1,2,3-thiadiazol-5-yl urea, TDZ), formerly registered as a cotton defoliant, is a well known inhibitor of cytokinin oxidase/dehydrogenase (CKX), an enzyme catalyzing the degradation of cytokinins. TDZ thus increases the lifetime of cytokinins and their effects in plants. We used in silico modeling to design, synthesize and characterize twenty new TDZ derivatives with improved inhibitory properties. Two compounds, namely 1-[1,2,3]thiadiazol-5-yl-3-(3-trifluoromethoxy-phenyl)urea (3FMTDZ) and 1-[2-(2-hydroxyethyl)phenyl]-3-(1,2,3-thiadiazol-5-yl)urea (HETDZ), displayed up to 15-fold lower IC 50 values compared with TDZ for AtCKX2 from Arabidopsis thaliana and ZmCKX1 and ZmCKX4a from Zea mays. Binding modes of 3FMTDZ and HETDZ were analyzed by X-ray crystallography. Crystal structure complexes, solved at 2.0 A resolution, revealed that HETDZ and 3FMTDZ bound differently in the active site of ZmCKX4a: the thiadiazolyl ring of 3FMTDZ was positioned over the isoalloxazine ring of FAD, whereas that of HETDZ had the opposite orientation, pointing toward the entrance of the active site. The compounds were further tested for cytokinin activity in several cytokinin bioassays. We suggest that the combination of simple synthesis, lowered cytokinin activity, and enhanced inhibitory effects on CKX isoforms, makes 3FMTDZ and HETDZ suitable candidates for in vivo studies.
Novel thidiazuron-derived inhibitors of cytokinin oxidase/dehydrogenase.,Nisler J, Kopecny D, Koncitikova R, Zatloukal M, Bazgier V, Berka K, Zalabak D, Briozzo P, Strnad M, Spichal L Plant Mol Biol. 2016 Jul 15. PMID:27422623[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Nisler J, Kopecny D, Koncitikova R, Zatloukal M, Bazgier V, Berka K, Zalabak D, Briozzo P, Strnad M, Spichal L. Novel thidiazuron-derived inhibitors of cytokinin oxidase/dehydrogenase. Plant Mol Biol. 2016 Jul 15. PMID:27422623 doi:http://dx.doi.org/10.1007/s11103-016-0509-0
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