This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5irw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:07, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5irw' size='340' side='right'caption='[[5irw]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='5irw' size='340' side='right'caption='[[5irw]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5irw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IRW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IRW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5irw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IRW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IRW FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D9P:1-DESTHIOBIOTINYLPYRENE'>D9P</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vgw|3vgw]], [[1vyo|1vyo]], [[4i60|4i60]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D9P:1-DESTHIOBIOTINYLPYRENE'>D9P</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5irw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5irw OCA], [http://pdbe.org/5irw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5irw RCSB], [http://www.ebi.ac.uk/pdbsum/5irw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5irw ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5irw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5irw OCA], [https://pdbe.org/5irw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5irw RCSB], [https://www.ebi.ac.uk/pdbsum/5irw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5irw ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK]] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
+
[https://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 28:
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bujacz, G]]
+
[[Category: Bujacz G]]
-
[[Category: Strzelczyk, P]]
+
[[Category: Strzelczyk P]]
-
[[Category: Biotin binding protein]]
+
-
[[Category: Complex]]
+

Current revision

Crystal structure of avidin in complex with 1-desthiobiotinylpyrene

PDB ID 5irw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools