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| | <StructureSection load='5j7i' size='340' side='right'caption='[[5j7i]], [[Resolution|resolution]] 4.00Å' scene=''> | | <StructureSection load='5j7i' size='340' side='right'caption='[[5j7i]], [[Resolution|resolution]] 4.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5j7i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_thermoglucosidasius Geobacillus thermoglucosidasius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J7I OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5J7I FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5j7i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Parageobacillus_thermoglucosidasius_C56-YS93 Parageobacillus thermoglucosidasius C56-YS93]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J7I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J7I FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=APR:ADENOSINE-5-DIPHOSPHORIBOSE'>APR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCY:S-ACETYL-CYSTEINE'>SCY</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=APR:ADENOSINE-5-DIPHOSPHORIBOSE'>APR</scene>, <scene name='pdbligand=SCY:S-ACETYL-CYSTEINE'>SCY</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5j78|5j78]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j7i OCA], [https://pdbe.org/5j7i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j7i RCSB], [https://www.ebi.ac.uk/pdbsum/5j7i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j7i ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Geoth_3234 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=634956 Geobacillus thermoglucosidasius])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetaldehyde_dehydrogenase_(acetylating) Acetaldehyde dehydrogenase (acetylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.10 1.2.1.10] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5j7i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j7i OCA], [http://pdbe.org/5j7i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j7i RCSB], [http://www.ebi.ac.uk/pdbsum/5j7i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j7i ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Geobacillus thermoglucosidasius]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Crennell, S J]] | + | [[Category: Parageobacillus thermoglucosidasius C56-YS93]] |
| - | [[Category: Danson, M J]] | + | [[Category: Crennell SJ]] |
| - | [[Category: Extance, J P]] | + | [[Category: Danson MJ]] |
| - | [[Category: Acetylating aldehyde dehydrogenase]] | + | [[Category: Extance JP]] |
| - | [[Category: Complex]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Acetylating aldehyde dehydrogenases (AcAldDH) catalyse the acetylation of Coenzyme-A (CoA), or in reverse generate acetaldehyde from Acetyl-CoA using NADH as a co-factor. This paper reports the expression, purification, enzyme assay and X-ray crystal structures of an AcAldDH from Geobacillus thermoglucosidasius (GtAcAldDH) to 2.1A and in complex with CoA and NAD+ to 4.0A. In the structure, the AcAldDH forms a close-knit dimer, similar to that seen in other Alcohol Dehydrogenase (ADH) structures. In GtAcAldDH these dimers associate via their N-termini to form weakly-interacting tetramers. This mode of tetrameric association is also seen in an unpublished AcAldDH deposited in the PDB, but is in contrast to all other ADH structures, (including the one other published AcAldDH found in a bacterial microcompartment), in which the dimers bury a large surface area including the C-termini. This novel mode of association sequesters the active sites and potentially-reactive acyl-enzyme intermediates in the centre of the tetramer. In other respects the structure is very similar to the other AcAldDH, binding the cofactors in a corresponding fashion. This similarity enabled the identification of a shortened substrate cavity in G. thermoglucosidasius AcAldDH, explaining the limitations on the length of substrate accepted by the enzyme. This article is protected by copyright. All rights reserved.
Structure of an acetylating aldehyde dehydrogenase from the thermophilic ethanologen Geobacillus thermoglucosidasius.,Extance J, Danson MJ, Crennell SJ Protein Sci. 2016 Aug 29. doi: 10.1002/pro.3027. PMID:27571338[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Extance J, Danson MJ, Crennell SJ. Structure of an acetylating aldehyde dehydrogenase from the thermophilic ethanologen Geobacillus thermoglucosidasius. Protein Sci. 2016 Aug 29. doi: 10.1002/pro.3027. PMID:27571338 doi:http://dx.doi.org/10.1002/pro.3027
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