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DNA ligase 3D structures

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Line 27: Line 27:
**[[1ta8]], [[1tae]] - EfLigD adenylation domain<br />
**[[1ta8]], [[1tae]] - EfLigD adenylation domain<br />
**[[1zau]] - MtLigD adenylation domain <br />
**[[1zau]] - MtLigD adenylation domain <br />
-
**[[3sgi]] – MtLigD (mutant) + AMP<br />
+
**[[3sgi]], [[6ksc]] – MtLigD A (mutant) + AMP<br />
 +
**[[7k72]] – MtLigD A + AMP + NAD<br />
 +
**[[6kjm]], [[6krh]] – MtLigD A + AMP + nicotinamide ribose-MP<br />
 +
**[[6kkv]], [[6lw8]]– MtLigD A + inhibitor<br />
**[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br />
**[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br />
**[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br />
**[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br />
Line 49: Line 52:
**[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br />
**[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br />
**[[3rr5]] – LigD - ''Thermococcus''<br />
**[[3rr5]] – LigD - ''Thermococcus''<br />
 +
**[[6wbo]] - LigD + AMP – ''Thermococcus gammatolerans''<br />
**[[5frq]] - LigD + DNA polymerase III subunit β – ''Helicobacter pylori''<br />
**[[5frq]] - LigD + DNA polymerase III subunit β – ''Helicobacter pylori''<br />
Line 54: Line 58:
**[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br />
**[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br />
-
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]] - hLigD I + DNA + AMP<br />
+
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]], [[7kr3]], [[7kr4]] - hLigD I + DNA + AMP<br />
-
**[[6p0e]], [[6q1v]] - hLigD I (mutant) + DNA + AMP<br />
+
**[[6p0e]], [[6q1v]], [[7l34]], [[7l35]] - hLigD I (mutant) + DNA + AMP<br />
**[[2od8]] – LigD I residues 32-53 + PCNA
**[[2od8]] – LigD I residues 32-53 + PCNA
Line 62: Line 66:
**[[3l2p]] – hLigD III residues 257-833 + DNA<br />
**[[3l2p]] – hLigD III residues 257-833 + DNA<br />
**[[1uw0]] - hLigD III zinc-finger domain residues 1-117 – NMR<br />
**[[1uw0]] - hLigD III zinc-finger domain residues 1-117 – NMR<br />
-
**[[1imo]], [[1in1]] - hLigD III BRCTdomain – NMR<br />
+
**[[1imo]], [[1in1]] - hLigD III BRCT domain – NMR<br />
-
**[[3pc7]] - hLigD III BRCTdomain<br />
+
**[[3pc7]] - hLigD III BRCT domain 932-1009<br />
-
**[[3pc8]] - hLigD III BRCTdomain (mutant) + XRCC1<br />
+
**[[3qvg]] - hLigD III BRCT domain + XRCC1<br />
-
**[[3qvg]] - hLigD III BRCTdomain + XRCC1
+
**[[3pc8]] - hLigD III BRCT domain (mutant) + XRCC1<br />
-
*Mammalian LigD IV
+
*Mammalian LigD IV; Domains - catalytic 1-609; DNA-binding 1-240; adenylation 268-405; BRCT 654-911
-
**[[3ii6]], [[ 1ik9]] – hLigD IV C-terminal BRCT domains + DNA repair protein XRCC4<br />
+
**[[3w5o]] - hLigD IV catalytic domain <br />
-
**[[3w5o]] - hLigD IV <br />
+
**[[3ii6]], [[1ik9]] – hLigD IV C-terminal BRCT domains + DNA repair protein XRCC4<br />
-
**[[2e2w]] - hLigD IV BRCT domain - NMR<br />
+
**[[2e2w]] - hLigD IV BRCT domain 654-759 - NMR<br />
-
**[[3vnn]] - hLigD IV adenylation domain<br />
+
**[[3vnn]] - hLigD IV adenylation domain <br />
-
**[[4hto]] - hLigD IV DNA-binding domain<br />
+
**[[4hto]], [[7d9k]] - hLigD IV DNA-binding domain <br />
 +
**[[7d9y]] - hLigD IV DNA-binding domain (mutant)<br />
**[[4htp]] - hLigD IV DNA-binding domain + artemis protein peptide<br />
**[[4htp]] - hLigD IV DNA-binding domain + artemis protein peptide<br />
**[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br />
**[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br />
-
**[[6bkg]], [[6bkf]] - hLigD IV + DNA<br />
+
**[[6bkg]], [[6bkf]] - hLigD IV catalytic domain + DNA + AMP<br />
 +
**[[7lsy]], [[7lt3]] - hLigD IV in NHEJ short-range synaptic complex – Cryo EM<br />
**[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br />
**[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br />

Revision as of 07:54, 4 July 2021

3D Structures of DNA ligase

Updated on 04-July-2021

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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