This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6m3y
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of pilus adhesin, SpaC from Lactobacillus rhamnosus GG - open conformation== | ==Crystal structure of pilus adhesin, SpaC from Lactobacillus rhamnosus GG - open conformation== | ||
| - | <StructureSection load='6m3y' size='340' side='right'caption='[[6m3y]]' scene=''> | + | <StructureSection load='6m3y' size='340' side='right'caption='[[6m3y]], [[Resolution|resolution]] 1.93Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M3Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M3Y FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6m3y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_7469 Atcc 7469]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M3Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M3Y FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m3y OCA], [http://pdbe.org/6m3y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m3y RCSB], [http://www.ebi.ac.uk/pdbsum/6m3y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m3y ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCE29_04955 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=47715 ATCC 7469])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m3y OCA], [http://pdbe.org/6m3y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m3y RCSB], [http://www.ebi.ac.uk/pdbsum/6m3y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m3y ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Adhesion to cell surfaces is an essential and early prerequisite for successful host colonization by bacteria, and in most instances involves the specificities of various adhesins. Among bacterial Gram-positives, some genera and species mediate attachment to host cells by using long non-flagellar appendages called sortase-dependent pili. A case in point is the beneficial Lactobacillus rhamnosus GG gut-adapted strain that produces the so-called SpaCBA pilus, a structure noted for its promiscuous binding to intestinal mucus and collagen. Structurally, SpaCBA pili are heteropolymers of three different pilin-protein subunits, each with its own location and function in the pilus: backbone SpaA for length, basal SpaB for anchoring, and tip SpaC for adhesion. Previously, we solved the SpaA tertiary structure by X-ray crystallography and also reported on the crystallization of SpaB and SpaC. Here, we reveal the full-length high-resolution (1.9 A) crystal structure of SpaC, a first for a sortase-dependent pilus-bearing commensal. The SpaC structure, unlike the representative four-domain architecture of other Gram-positive tip pilins, espouses an atypically longer five-domain arrangement that includes N-terminal 'binding' and C-terminal 'stalk' regions of two and three domains, respectively. With the prospect of establishing new mechanistic insights, we provide a structural basis for the multi-substrate binding nature of SpaC, as well as a structural model that reconciles its exclusive localization at the SpaCBA pilus tip. | ||
| + | |||
| + | Crystal structure of lactobacillar SpaC reveals an atypical five-domain pilus tip adhesin: Exposing its substrate-binding and assembly in SpaCBA pili.,Kant A, Palva A, von Ossowski I, Krishnan V J Struct Biol. 2020 Jul 9:107571. doi: 10.1016/j.jsb.2020.107571. PMID:32653644<ref>PMID:32653644</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6m3y" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Atcc 7469]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Kant A]] | + | [[Category: Kant, A]] |
| - | [[Category: Krishnan V]] | + | [[Category: Krishnan, V]] |
| - | [[Category: Palva A]] | + | [[Category: Ossowski, I von]] |
| - | [[Category: | + | [[Category: Palva, A]] |
| + | [[Category: Cell adhesion]] | ||
| + | [[Category: Fimbria]] | ||
| + | [[Category: Lactobacillus rhamnosus gg]] | ||
| + | [[Category: Lectin]] | ||
| + | [[Category: Pili]] | ||
| + | [[Category: Pilus adhesin]] | ||
| + | [[Category: Probiotic]] | ||
| + | [[Category: Sortase]] | ||
| + | [[Category: Spac]] | ||
| + | [[Category: Spacba pilus]] | ||
| + | [[Category: Surface protein]] | ||
| + | [[Category: Tip pilin]] | ||
| + | [[Category: Vwfa domain]] | ||
Revision as of 06:31, 19 August 2020
Crystal structure of pilus adhesin, SpaC from Lactobacillus rhamnosus GG - open conformation
| |||||||||||
Categories: Atcc 7469 | Large Structures | Kant, A | Krishnan, V | Ossowski, I von | Palva, A | Cell adhesion | Fimbria | Lactobacillus rhamnosus gg | Lectin | Pili | Pilus adhesin | Probiotic | Sortase | Spac | Spacba pilus | Surface protein | Tip pilin | Vwfa domain
