6zon

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Current revision (07:41, 1 May 2024) (edit) (undo)
 
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====
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==SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1==
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<StructureSection load='6zon' size='340' side='right'caption='[[6zon]]' scene=''>
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<StructureSection load='6zon' size='340' side='right'caption='[[6zon]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6zon]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZON FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zon OCA], [http://pdbe.org/6zon PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zon RCSB], [http://www.ebi.ac.uk/pdbsum/6zon PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zon ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zon OCA], [https://pdbe.org/6zon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zon RCSB], [https://www.ebi.ac.uk/pdbsum/6zon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zon ProSAT]</span></td></tr>
</table>
</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/EIF3D_HUMAN EIF3D_HUMAN] Defects in EIF3D are associated with some cancers, such as prostate, breast and colon cancers. Disease susceptibility may be associated with variants affecting the gene represented in this entry. Down-regulation inhibits proliferation of cancers (PubMed:25370813, PubMed:25322666, PubMed:25682860, PubMed:26617750, PubMed:26008152, PubMed:26036682, PubMed:27035563).<ref>PMID:25322666</ref> <ref>PMID:25370813</ref> <ref>PMID:25682860</ref> <ref>PMID:26008152</ref> <ref>PMID:26036682</ref> <ref>PMID:26617750</ref> <ref>PMID:27035563</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/EIF3D_HUMAN EIF3D_HUMAN] mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, a complex required for several steps in the initiation of protein synthesis of a specialized repertoire of mRNAs (PubMed:27462815). The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation (PubMed:18599441, PubMed:25849773). The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression (PubMed:25849773). In the eIF-3 complex, EIF3D specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs (PubMed:27462815).<ref>PMID:18599441</ref> <ref>PMID:25849773</ref> <ref>PMID:27462815</ref> (Microbial infection) In case of FCV infection, plays a role in the ribosomal termination-reinitiation event leading to the translation of VP2 (PubMed:18056426).<ref>PMID:18056426</ref>
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==See Also==
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*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[3D sructureseceptor for activated protein kinase C 1|3D sructureseceptor for activated protein kinase C 1]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Severe acute respiratory syndrome coronavirus 2]]
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[[Category: Ameismeier M]]
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[[Category: Becker T]]
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[[Category: Beckmann R]]
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[[Category: Berninghausen O]]
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[[Category: Buschauer R]]
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[[Category: Cheng J]]
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[[Category: Denk T]]
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[[Category: Kratzat H]]
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[[Category: Mackens-Kiani T]]
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[[Category: Thoms M]]

Current revision

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

PDB ID 6zon

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