6laf
From Proteopedia
(Difference between revisions)
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==Crystal structure of core domain of a Pili-like protein== | ==Crystal structure of core domain of a Pili-like protein== | ||
- | <StructureSection load='6laf' size='340' side='right'caption='[[6laf]]' scene=''> | + | <StructureSection load='6laf' size='340' side='right'caption='[[6laf]], [[Resolution|resolution]] 3.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LAF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LAF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6laf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Akkm8 Akkm8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LAF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LAF FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6laf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6laf OCA], [http://pdbe.org/6laf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6laf RCSB], [http://www.ebi.ac.uk/pdbsum/6laf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6laf ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6lad|6lad]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Amuc_1100 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=349741 AKKM8])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6laf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6laf OCA], [http://pdbe.org/6laf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6laf RCSB], [http://www.ebi.ac.uk/pdbsum/6laf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6laf ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Akkermansia muciniphila is a beneficial microorganism colonized in the human gut that can reverse many intestinal metabolic-related diseases. Amuc_1100 is an outer-membrane protein of A. muciniphila. Oral administration of Amuc_1100 can reduce fat mass development, insulin resistance, and dyslipidemia in mice and activated the toll-like receptor 2 (TLR2) to regulate the immune response of the host, but the molecular mechanism remains unclear. Here we report the crystal structure of the extramembranous domain of Amuc_1100, which consists of a four-stranded antiparallel beta-sheet and four alpha-helices. Two C-terminal helices and the four-stranded antiparallel beta-sheet formed two "alphabetabeta" motifs and constituted the core domain, which shared a similar fold with type IV pili and type II Secretion system protein. Although the full-length of the extramembranous domain of Amuc_1100 existed as a monomer in solution, they formed trimer in the crystal. Elimination of the N-terminal coiled-coil helix alpha1 led to dimerization of Amuc_1100 both in solution and in crystal, indicating that the oligomeric state of Amuc_1100 was variable and could be influenced by alpha1. In addition, we identified that Amuc_1100 could directly bind human TLR2 (hTRL2) in vitro, suggesting that Amuc_1100 may serve as a new ligand for hTLR2. Dimerization of Amuc_1100 improved its hTLR2-binding affinity, suggesting that the alpha1-truncated Amuc_1100 could be a beneficial candidate for the development of A. muciniphila related drugs. | ||
+ | |||
+ | The variable oligomeric state of Amuc_1100 from Akkermansia muciniphila.,Wang J, Xiang R, Wang R, Zhang B, Gong W, Zhang J, Zhang M, Wang M J Struct Biol. 2020 Jul 28:107593. doi: 10.1016/j.jsb.2020.107593. PMID:32736072<ref>PMID:32736072</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6laf" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Akkm8]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Wang J]] | + | [[Category: Wang, J]] |
- | [[Category: Wang M]] | + | [[Category: Wang, M]] |
- | [[Category: Xiang R]] | + | [[Category: Xiang, R]] |
- | [[Category: Zhang M]] | + | [[Category: Zhang, M]] |
+ | [[Category: Akkermansia muciniphila]] | ||
+ | [[Category: Amuc_1100]] | ||
+ | [[Category: Membrane protein]] | ||
+ | [[Category: Outer-membrane protein]] | ||
+ | [[Category: Toll-like receptor 2]] | ||
+ | [[Category: Type ii secretion system]] |
Revision as of 06:30, 19 August 2020
Crystal structure of core domain of a Pili-like protein
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