This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5l8x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5l8x' size='340' side='right'caption='[[5l8x]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='5l8x' size='340' side='right'caption='[[5l8x]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5l8x]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L8X OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5L8X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5l8x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5L8X FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMR:(2S)-2-HYDROXYBUTANEDIOIC+ACID'>LMR</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mtrA, MJ0851 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMR:(2S)-2-HYDROXYBUTANEDIOIC+ACID'>LMR</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tetrahydromethanopterin_S-methyltransferase Tetrahydromethanopterin S-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.86 2.1.1.86] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5l8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l8x OCA], [https://pdbe.org/5l8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5l8x RCSB], [https://www.ebi.ac.uk/pdbsum/5l8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5l8x ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5l8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l8x OCA], [http://pdbe.org/5l8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5l8x RCSB], [http://www.ebi.ac.uk/pdbsum/5l8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5l8x ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MTRA_METJA MTRA_METJA]] Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.[HAMAP-Rule:MF_01093]
+
[https://www.uniprot.org/uniprot/MTRA_METJA MTRA_METJA] Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.[HAMAP-Rule:MF_01093]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Metja]]
+
[[Category: Methanocaldococcus jannaschii DSM 2661]]
-
[[Category: Tetrahydromethanopterin S-methyltransferase]]
+
[[Category: Ermler U]]
-
[[Category: Ermler, U]]
+
[[Category: Shima S]]
-
[[Category: Shima, S]]
+
[[Category: Wagner T]]
-
[[Category: Wagner, T]]
+
-
[[Category: Cobalamin]]
+
-
[[Category: Coenzymem]]
+
-
[[Category: Hyperthermophile]]
+
-
[[Category: Marine organism]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Methanogenesis]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: Motor pump]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Transferase]]
+
-
[[Category: Vitamin b12]]
+

Revision as of 16:11, 4 October 2023

X-RAY STRUCTURE OF APO METHANOCALDOCOCCUS JANNASCHII METHYLTRANSFERASE SUBUNIT A AT 1.85 ANGSTROM

PDB ID 5l8x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools