This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5lbd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:13, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5lbd' size='340' side='right'caption='[[5lbd]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='5lbd' size='340' side='right'caption='[[5lbd]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5lbd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LBD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LBD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5lbd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LBD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cu(+)_exporting_ATPase Cu(+) exporting ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.54 3.6.3.54] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lbd OCA], [https://pdbe.org/5lbd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lbd RCSB], [https://www.ebi.ac.uk/pdbsum/5lbd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lbd ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lbd OCA], [http://pdbe.org/5lbd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lbd RCSB], [http://www.ebi.ac.uk/pdbsum/5lbd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lbd ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HMA6_ARATH HMA6_ARATH]] Mediates copper transfer across the plastid envelope. Required for the delivery of copper into the plastid stroma, which is essential for the function of copper proteins. Seems to be selective for monovalent copper Cu(+) transport. Plays also a role in glucose signaling-mediated cell proliferation of root meristem in non-green tissues.<ref>PMID:12782727</ref> <ref>PMID:15772282</ref> <ref>PMID:21878617</ref> <ref>PMID:14593172</ref>
+
[https://www.uniprot.org/uniprot/HMA6_ARATH HMA6_ARATH] Mediates copper transfer across the plastid envelope. Required for the delivery of copper into the plastid stroma, which is essential for the function of copper proteins. Seems to be selective for monovalent copper Cu(+) transport. Plays also a role in glucose signaling-mediated cell proliferation of root meristem in non-green tissues.<ref>PMID:12782727</ref> <ref>PMID:15772282</ref> <ref>PMID:21878617</ref> <ref>PMID:14593172</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Arabidopsis thaliana]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Mayerhofer, H]]
+
[[Category: Mayerhofer H]]
-
[[Category: Pebay-Peyroula, E]]
+
[[Category: Pebay-Peyroula E]]
-
[[Category: Ravaud, S]]
+
[[Category: Ravaud S]]
-
[[Category: Chloroplast]]
+
-
[[Category: Copper transporter]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inner membrane]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: P-type atpase]]
+

Current revision

Crystal structure of the N-domain of HMA6, a copper-transporting P-type ATPase

PDB ID 5lbd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5lbd"
Personal tools