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Green Fluorescent Protein 3D structures
From Proteopedia
(Difference between revisions)
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{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
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* Green Fluorescent Protein | * Green Fluorescent Protein | ||
| - | **[[2qu1]], [[2h9w]], [[5t3i]], [[5dy6]], [[5dtz]], [[5dtx]], [[5btt]], [[5bt0]], [[4xow]], [[4pfe]], [[6as9]], [[5wwk]], [[5o89]], [[5jzl]], [[5jzk]], [[6qq8]], [[6qq9]], [[6qqa]], [[6qqb | + | **[[2qu1]], [[2h9w]], [[5t3i]], [[5dy6]], [[5dtz]], [[5dtx]], [[5btt]], [[5bt0]], [[4xow]], [[4pfe]], [[6as9]], [[5wwk]], [[5o89]], [[5jzl]], [[5jzk]], [[6qq8]], [[6qq9]], [[6qqa]], [[6qqb]], [[6pfr]], [[6pfs]], [[6pft]], [[6pfu]], [[6t39]], [[6t3a]], [[7a7k]], [[7a7l]], [[7a7s]], [[7a7t]] – jGFP - jellyfish<br /> |
| - | **[[3la1]], [[3i19]], [[2wur]], [[3gex]], [[2qrf]], [[2qt2]], [[2qz0]], [[2gj2]], [[3cb9]], [[3cbe]], [[3cd1]], [[3cd9]], [[2hjo]], [[2hqz]], [[2hrs]], [[2okw]], [[2oky]], [[2q57]], [[2due]], [[2duf]], [[2dug]], [[2duh]], [[2dui]], [[2hcg]], [[2hfc]], [[2hgd]], [[2hgy]], [[2awj]], [[2awk]], [[2awl]], [[2awm]], [[2g16]], [[2g2s]], [[2g3d]], [[2g5z]], [[2g6e]], [[2ah8]], [[2aha]], [[2fwq]], [[2fzu]], [[1z1p]], [[1z1q]], [[1yhg]], [[1yhh]], [[1yhi]], [[1yj2]], [[1yjf]], [[1s6z]], [[1q4a]], [[1q4b]], [[1q4c]], [[1q4d]], [[1q4e]], [[1q73]], [[1qyf]], [[1qyo]], [[1qyq]], [[1qst]], [[1qy3]], [[1cv7]], [[1jc0]], [[1jc1]], [[1jby]], [[1jbz]], [[1kp5]], [[1kyp]], [[1hcj]], [[1h6r]], [[1b9c]], [[1c4f]], [[1emc]], [[1eme]], [[1emf]], [[1emk]], [[1eml]], [[1emm]], [[2emd]], [[2emn]], [[2emo]], [[1emb]], [[1gfl]], [[1ema]], [[2y0g]], [[3gj1]], [[3gj2]], [[3p28]], [[1qxt]], [[3sry]], [[3ssp]], [[3st0]], [[3ufz]], [[3ug0]], [[4eul]], [[4ges]], [[4j88]], [[4j89]], [[4j8a]], [[3w1c]], [[3w1d]], [[4h47]], [[4h48]], [[4jfg]], [[4lw5]], [[4ka9]], [[4kag]], [[4kex]], [[4n3d]], [[4ogs]], [[4p1q]], [[5hzo]], [[5hw9]], [[5hge]], [[5hbd]], [[5ehu]], [[5dpj]], [[5dpi]], [[5dpg]], [[5dph]], [[6b7t]], [[6b7r]], [[5wj4]], [[5wj3]], [[5wj2]], [[5o8c]], [[5o8b]], [[5o8a]], [[5n9o]], [[5mse]], [[6jgj]], [[6jgi]], [[6jgh]], [[6ir7]], [[6ir6]], [[6grm]], [[6gqh]], [[6gqg]], [[6go9]], [[6go8]], [[6fww]], [[6dq1]], [[6aa6]], [[6aa2]], [[5yr2]], [[5ni3]], [[ | + | **[[3la1]], [[3i19]], [[2wur]], [[3gex]], [[2qrf]], [[2qt2]], [[2qz0]], [[2gj2]], [[3cb9]], [[3cbe]], [[3cd1]], [[3cd9]], [[2hjo]], [[2hqz]], [[2hrs]], [[2okw]], [[2oky]], [[2q57]], [[2due]], [[2duf]], [[2dug]], [[2duh]], [[2dui]], [[2hcg]], [[2hfc]], [[2hgd]], [[2hgy]], [[2awj]], [[2awk]], [[2awl]], [[2awm]], [[2g16]], [[2g2s]], [[2g3d]], [[2g5z]], [[2g6e]], [[2ah8]], [[2aha]], [[2fwq]], [[2fzu]], [[1z1p]], [[1z1q]], [[1yhg]], [[1yhh]], [[1yhi]], [[1yj2]], [[1yjf]], [[1s6z]], [[1q4a]], [[1q4b]], [[1q4c]], [[1q4d]], [[1q4e]], [[1q73]], [[1qyf]], [[1qyo]], [[1qyq]], [[1qst]], [[1qy3]], [[1cv7]], [[1jc0]], [[1jc1]], [[1jby]], [[1jbz]], [[1kp5]], [[1kyp]], [[1hcj]], [[1h6r]], [[1b9c]], [[1c4f]], [[1emc]], [[1eme]], [[1emf]], [[1emk]], [[1eml]], [[1emm]], [[2emd]], [[2emn]], [[2emo]], [[1emb]], [[1gfl]], [[1ema]], [[2y0g]], [[3gj1]], [[3gj2]], [[3p28]], [[1qxt]], [[3sry]], [[3ssp]], [[3st0]], [[3ufz]], [[3ug0]], [[4eul]], [[4ges]], [[4j88]], [[4j89]], [[4j8a]], [[3w1c]], [[3w1d]], [[4h47]], [[4h48]], [[4jfg]], [[4lw5]], [[4ka9]], [[4kag]], [[4kex]], [[4n3d]], [[4ogs]], [[4p1q]], [[5hzo]], [[5hw9]], [[5hge]], [[5hbd]], [[5ehu]], [[5dpj]], [[5dpi]], [[5dpg]], [[5dph]], [[6b7t]], [[6b7r]], [[5wj4]], [[5wj3]], [[5wj2]], [[5o8c]], [[5o8b]], [[5o8a]], [[5n9o]], [[5mse]], [[6fll]], [[6jgj]], [[6jgi]], [[6jgh]], [[6ir7]], [[6ir6]], [[6grm]], [[6gqh]], [[6gqg]], [[6go9]], [[6go8]], [[6fww]], [[6dq1]], [[6aa6]], [[6aa2]], [[5yr2]], [[5ni3]], [[6hut]], [[6kkz]], [[6kl0]], [[6kl1]], [[6krg]], [[6l27]], [[6quh]], [[6qui]], [[6quj]], [[6uhj]], [[6uhk]], [[6uhl]], [[6uhm]], [[6uhn]], [[6uho]], [[6uhp]], [[6uhq]], [[6uhr]], [[6un4]], [[6un5]], [[6vio]], [[7a7q]], [[7a7r]], [[7a7v]], [[7a7w]], [[7a7y]], [[7a84]], [[7a85]], [[7a8j]], [[7a8n]], [[7a8o]] – jGFP (mutant)<br /> |
| - | ** [[3evp]], [[5f9g]], [[4zf5]], [[4zf4]], [[4zf3]], [[6ofk]], [[6ofl]], [[6ofm]], [[6ofn]], [[6ofo]], [[6og8]], [[6og9]], [[6oga]], [[6ogb]], [[6ogc]] – jGFP circular permutation<br /> | + | **[[6mdr]] – jGFP (mutant) – Cryo EM<br /> |
| + | **[[3evp]], [[5f9g]], [[4zf5]], [[4zf4]], [[4zf3]], [[6ofk]], [[6ofl]], [[6ofm]], [[6ofn]], [[6ofo]], [[6og8]], [[6og9]], [[6oga]], [[6ogb]], [[6ogc]], [[6un6]], [[6un7]] – jGFP circular permutation<br /> | ||
**[[5du0]], [[5dty]], [[4xov]], [[6h01]] – jGFP non-fluorescent<br /> | **[[5du0]], [[5dty]], [[4xov]], [[6h01]] – jGFP non-fluorescent<br /> | ||
| - | ** [[1rm9]], [[1rmm]], [[1rmo]], [[1rmp]], [[1rrz]] – jGFP containing fluorotryptophan<br /> | + | **[[1rm9]], [[1rmm]], [[1rmo]], [[1rmp]], [[1rrz]] – jGFP containing fluorotryptophan<br /> |
| - | ** [[2h6v]], [[5j3n]] – jGFP+imidazole derivative<br /> | + | **[[6sm0]] - jGFP containing azidoPhe<br /> |
| - | ** [[2o24]], [[2o29]], [[2o2b]], [[1w7u]], [[1w7t]], [[1w7s]], [[1emg]] – jGFP (mutant)+imidazole derivative<br /> | + | **[[2h6v]], [[5j3n]] – jGFP+imidazole derivative<br /> |
| + | **[[2o24]], [[2o29]], [[2o2b]], [[1w7u]], [[1w7t]], [[1w7s]], [[1emg]] – jGFP (mutant)+imidazole derivative<br /> | ||
** [[1kyr]] – jGFP (mutant)+imidazole derivative+Cu<br /> | ** [[1kyr]] – jGFP (mutant)+imidazole derivative+Cu<br /> | ||
** [[1kys]] – jGFP (mutant)+imidazole derivative+Zn<br /> | ** [[1kys]] – jGFP (mutant)+imidazole derivative+Zn<br /> | ||
** [[3ss0]], [[3ssh]], [[3ssk]], [[3ssl]], [[3sst]], [[3ssv]], [[3ssy]], [[3sv5]], [[3svb]], [[3svc]], [[3svd]], [[3sve]] – jGFP (mutant)+imidazole derivative+ halide<br /> | ** [[3ss0]], [[3ssh]], [[3ssk]], [[3ssl]], [[3sst]], [[3ssv]], [[3ssy]], [[3sv5]], [[3svb]], [[3svc]], [[3svd]], [[3sve]] – jGFP (mutant)+imidazole derivative+ halide<br /> | ||
** [[4gf6]] - jGFP (mutant) +Cu<br /> | ** [[4gf6]] - jGFP (mutant) +Cu<br /> | ||
| - | ** [[3ogo]] | + | ** [[3ogo]], [[3g9a]], [[3k1k]], [[6lr7]], [[6xzf]] – jGFP + nanobody <br /> |
| - | + | ||
**[[4xvp]], [[4xl5]] – jGFP (mutant) + BGFP<br /> | **[[4xvp]], [[4xl5]] – jGFP (mutant) + BGFP<br /> | ||
**[[5mfc]] – jGFP + armadillo repeat protein<br /> | **[[5mfc]] – jGFP + armadillo repeat protein<br /> | ||
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** [[2vzx]], [[5exb]] – DeGFP – Dendronephthya<br /> | ** [[2vzx]], [[5exb]] – DeGFP – Dendronephthya<br /> | ||
** [[2gw3]] – GFP KAEDE – ''Trachiphyllia geoffroyi''<br /> | ** [[2gw3]] – GFP KAEDE – ''Trachiphyllia geoffroyi''<br /> | ||
| - | ** [[2pox]], [[2gx0]], [[2gx2]], [[2iov]], [[2ie2]] – | + | ** [[2pox]], [[2gx0]], [[2gx2]], [[2iov]], [[2ie2]] – EchFP Dronpa2 – Echinophyllia<br /> |
| + | **[[6d38]], [[6d39]], [[6nqj]], [[6nqk]], [[6nql]], [[6nqq]], [[6nqr]], [[6nqs]], [[6nqv]] - EchFP Dronpa2 (mutant) <br /> | ||
** [[2dd7]] – CpGFP - ''Chiridius poppei''<br /> | ** [[2dd7]] – CpGFP - ''Chiridius poppei''<br /> | ||
** [[2dd9]] – CpGFP (mutant)<br /> | ** [[2dd9]] – CpGFP (mutant)<br /> | ||
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**[[4jc2]] – GFP – soft coral<br /> | **[[4jc2]] – GFP – soft coral<br /> | ||
**[[6l26]] – GFP – ''Nicotiana benthamiana''<br /> | **[[6l26]] – GFP – ''Nicotiana benthamiana''<br /> | ||
| + | **[[7lg4]] – GFP – ''Aequorea macrodactyla''<br /> | ||
| + | **[[6s67]] – GFP – ''Aequorea australis''<br /> | ||
| + | **[[6m9x]], [[6m9y]], [[6m9z]] – GFP – ''Branchiostoma floridae''<br /> | ||
* Yellow fluorescent protein | * Yellow fluorescent protein | ||
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**[[5ltr]] – clRFP<br /> | **[[5ltr]] – clRFP<br /> | ||
| - | * Red fluorescent protein | + | * Red fluorescent protein or mCherry |
** [[2icr]], [[2ojk]] – Z-RFP <br /> | ** [[2icr]], [[2ojk]] – Z-RFP <br /> | ||
** [[2fl1]] – Z-RFP (mutant)<br /> | ** [[2fl1]] – Z-RFP (mutant)<br /> | ||
| - | ** [[3bx9]], [[3bxa]], [[3bxb]], [[3bxc]], [[3e5t]], [[3e5w]], [[1uis]], [[3ip2]], [[3pj5]], [[3pj7]], [[3pjb]], [[3pib]] - EnRFP – ''Entacmaea quadricolor''<br /> | + | ** [[3bx9]], [[3bxa]], [[3bxb]], [[3bxc]], [[3e5t]], [[3e5w]], [[1uis]], [[3ip2]], [[3pj5]], [[3pj7]], [[3pjb]], [[3pib]], [[6xwy]] - EnRFP – ''Entacmaea quadricolor''<br /> |
| - | ** [[3e5v]], [[3rwt]] – EnRFP (mutant)<br /> | + | ** [[3e5v]], [[3rwa]], [[3rwt]] – EnRFP (mutant)<br /> |
| - | ** [[1zgo]], [[2vad]], [[2vae]], [[1ggx]] – DiRFP – ''Discosoma''<br /> | + | ** [[1zgo]], [[2h5o]], [[2h5p]], [[2h5q]], [[2h5r]], [[2vad]], [[2vae]], [[1ggx]], [[3ned]], [[3nez]], [[3nf0]], [[4zin]], [[4zio]], [[5fhv]], [[6ylm]] – DiRFP – ''Discosoma''<br /> |
| - | ** [[1zgp]], [[1zgq]], [[2h8q]], [[2v4e]], [[1g7k]] – DiRFP (mutant)<br /> | + | ** [[1zgp]], [[1zgq]], [[2h8q]], [[2v4e]], [[1g7k]], [[6mz3]] – DiRFP (mutant)<br /> |
| + | **[[6b0b]], [[6bbo]] – DiRFP + APOBEC3H + RNA<br /> | ||
| + | **[[6wqk]] – DiRFP/hnRNPA2 – Cryo EM<br /> | ||
| + | **[[6v00]], [[6v01]] – DiRFP/KCNQ3 + KCNQ1 + Cam-1 – Cryo EM<br /> | ||
** [[3cfa]] – AsRFP – ''Anemonia sulcata''<br /> | ** [[3cfa]] – AsRFP – ''Anemonia sulcata''<br /> | ||
** [[3nt3]], [[3nt9]] – RFP – artificial gene<br /> | ** [[3nt3]], [[3nt9]] – RFP – artificial gene<br /> | ||
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** [[3u8a]], [[3u8c]], [[4kge]], [[4kgf]], [[4gob]] – GFP - synthetic<br /> | ** [[3u8a]], [[3u8c]], [[4kge]], [[4kgf]], [[4gob]] – GFP - synthetic<br /> | ||
**[[5exc]] – DeGFP<br /> | **[[5exc]] – DeGFP<br /> | ||
| + | **[[6ir1]], [[6ir2]] – GFP + nanobody – ''Anaplasma marginale''<br /> | ||
* Cyan fluorescent protein | * Cyan fluorescent protein | ||
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** [[1bfp]], [[4orn]] – jGFP (mutant)<br /> | ** [[1bfp]], [[4orn]] – jGFP (mutant)<br /> | ||
** [[4en1]] – jGFP <br /> | ** [[4en1]] – jGFP <br /> | ||
| + | **[[6jc5]], [[6jc6]] – GFP – ''Stichodactyla haddoni''<br /> | ||
| + | **[[6j7h]] – GFP – uncultured<br /> | ||
* Cerulean fluorescent protein | * Cerulean fluorescent protein | ||
| - | **[[5oxc]] – GFP (mutant) – vaccinia virus<br /> | + | **[[5oxc]], [[6yln]] – GFP (mutant) – vaccinia virus<br /> |
**[[5oxb]], [[5oxa]] – jGFP (mutant)<br /> | **[[5oxb]], [[5oxa]] – jGFP (mutant)<br /> | ||
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** [[2vvh]], [[2vvi]], [[2vvj]], [[3p8u]] – LhGFP (mutant) – ''Lobophyllia hemprichii''<br /> | ** [[2vvh]], [[2vvi]], [[2vvj]], [[3p8u]] – LhGFP (mutant) – ''Lobophyllia hemprichii''<br /> | ||
| - | ** [[1zux]] – LhGFP<br /> | + | ** [[1zux]], [[6goz]], [[6gp0]], [[6gp1]], [[6yls]] – LhGFP<br /> |
** [[2btj]] - LhGFP+imidazole derivative<br /> | ** [[2btj]] - LhGFP+imidazole derivative<br /> | ||
** [[2ddc]], [[1xss]] – FfFP – ''Favia favus''<br /> | ** [[2ddc]], [[1xss]] – FfFP – ''Favia favus''<br /> | ||
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**[[7bwn]] – jGFP (mutant)/p53<br /> | **[[7bwn]] – jGFP (mutant)/p53<br /> | ||
**[[6efr]] – jGFP/nicotine biosensor<br /> | **[[6efr]] – jGFP/nicotine biosensor<br /> | ||
| + | **[[6gel]], [[6gez]] – jGFP/calcium sensor<br /> | ||
| + | **[[6zui]] – jGFP/transcriptional repressor<br /> | ||
| + | **[[7cd7]], [[7cd8]] – jGFP/GFP-40<br /> | ||
| + | **[[6wvg]] – jGFP/CD53<br /> | ||
| + | **[[6wrf]], [[6wsg]] – jGFP/ClpX-ClpP<br /> | ||
| + | **[[6w1z]], [[6w20]], [[6w21]], [[6w22]], [[6w23]], [[6w24]] – jGFP/ClpA – Cryo EM<br /> | ||
| + | **[[6lnp]] – jGFP/CitA<br /> | ||
| + | **[[6wve]] – jGFP/SPCS1<br /> | ||
| + | **[[6wvf]] – jGFP/DsbB<br /> | ||
| + | **[[6wvd]] – jGFP/JAGN1<br /> | ||
| + | **[[6zqo]] – jGFP/G protein<br /> | ||
| + | **[[7ks0]], [[7ks3]] – jGFP/GluK5 + GluK2 – Cryo EM<br /> | ||
| + | **[[6wv9]], [[6wva]], [[6wvi]] – jGFP/VKOR<br /> | ||
| + | **[[6wv5]], [[6wv8]] – jGFP/VKOR (mutant) + vitamin K1<br /> | ||
| + | **[[6wv3]], [[6wv6]], [[6wv7]], [[6wvb]], [[6wvh]] – jGFP/VKOR + anticoagulant<br /> | ||
| + | **[[6wv4]] – jGFP/VKOR (mutant) + anticoagulant<br /> | ||
**[[6mks]] – jGFP/NLRcard – Cryo EM<br /> | **[[6mks]] – jGFP/NLRcard – Cryo EM<br /> | ||
**[[6mb2]] – jGFP/AIM2 – Cryo EM<br /> | **[[6mb2]] – jGFP/AIM2 – Cryo EM<br /> | ||
**[[6itc]] – jGFP/translocase + nanobody – Cryo EM<br /> | **[[6itc]] – jGFP/translocase + nanobody – Cryo EM<br /> | ||
| - | **[[ | + | **[[6uz3]] – jGFP/sodium channel – Cryo EM<br /> |
| - | **[[6val]] – jGFP/Calhm – Cryo EM<br /> | + | **[[7k18]] – jGFP/sodium channel + toxin – Cryo EM<br /> |
| + | **[[6uz0]] – jGFP/sodium channel + drug – Cryo EM<br /> | ||
| + | **[[6val]], [[6vam]] – jGFP/Calhm – Cryo EM<br /> | ||
| + | **[[7byl]] – jGFP/KCNQ4 – Cryo EM<br /> | ||
| + | **[[7bym]], [[7byn]] – jGFP/KCNQ4 + drug – Cryo EM<br /> | ||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:48, 17 August 2021
3D structures of Green Fluorescent Protein
(Updated on 17-August-2021)
