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| | <StructureSection load='5lsf' size='340' side='right'caption='[[5lsf]], [[Resolution|resolution]] 2.10Å' scene=''> | | <StructureSection load='5lsf' size='340' side='right'caption='[[5lsf]], [[Resolution|resolution]] 2.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5lsf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sacbrood_virus Sacbrood virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LSF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LSF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5lsf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sacbrood_virus Sacbrood virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LSF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LSF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lsf OCA], [http://pdbe.org/5lsf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lsf RCSB], [http://www.ebi.ac.uk/pdbsum/5lsf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lsf ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lsf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lsf OCA], [https://pdbe.org/5lsf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lsf RCSB], [https://www.ebi.ac.uk/pdbsum/5lsf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lsf ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A2S0CUG6_9VIRU A0A2S0CUG6_9VIRU] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| | [[Category: Sacbrood virus]] | | [[Category: Sacbrood virus]] |
| - | [[Category: Plevka, P]] | + | [[Category: Plevka P]] |
| - | [[Category: Veselikova, M]] | + | [[Category: Veselikova M]] |
| - | [[Category: External vp4]]
| + | |
| - | [[Category: Iflaviridae]]
| + | |
| - | [[Category: Virus]]
| + | |
| Structural highlights
Function
A0A2S0CUG6_9VIRU
Publication Abstract from PubMed
Infection by sacbrood virus (SBV) from the family Iflaviridae is lethal to honey bee larvae but only rarely causes the collapse of honey bee colonies. Despite the negative effect of SBV on honey bees, the structure of its particles and mechanism of its genome delivery are unknown. Here we present the crystal structure of SBV virion and show that it contains 60 copies of a minor capsid protein (MiCP) attached to the virion surface. No similar MiCPs have been previously reported in any of the related viruses from the order Picornavirales. The location of the MiCP coding sequence within the SBV genome indicates that the MiCP evolved from a C-terminal extension of a major capsid protein by the introduction of a cleavage site for a virus protease. The exposure of SBV to acidic pH, which the virus likely encounters during cell entry, induces the formation of pores at threefold and fivefold axes of the capsid that are 7 A and 12 A in diameter, respectively. This is in contrast to vertebrate picornaviruses, in which the pores along twofold icosahedral symmetry axes are currently considered the most likely sites for genome release. SBV virions lack VP4 subunits that facilitate the genome delivery of many related dicistroviruses and picornaviruses. MiCP subunits induce liposome disruption in vitro, indicating that they are functional analogs of VP4 subunits and enable the virus genome to escape across the endosome membrane into the cell cytoplasm.
Virion structure and genome delivery mechanism of sacbrood honeybee virus.,Prochazkova M, Fuzik T, Skubnik K, Moravcova J, Ubiparip Z, Pridal A, Plevka P Proc Natl Acad Sci U S A. 2018 Jul 9. pii: 1722018115. doi:, 10.1073/pnas.1722018115. PMID:29987012[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Prochazkova M, Fuzik T, Skubnik K, Moravcova J, Ubiparip Z, Pridal A, Plevka P. Virion structure and genome delivery mechanism of sacbrood honeybee virus. Proc Natl Acad Sci U S A. 2018 Jul 9. pii: 1722018115. doi:, 10.1073/pnas.1722018115. PMID:29987012 doi:http://dx.doi.org/10.1073/pnas.1722018115
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