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6jbc

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Current revision (10:05, 22 November 2023) (edit) (undo)
 
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<StructureSection load='6jbc' size='340' side='right'caption='[[6jbc]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='6jbc' size='340' side='right'caption='[[6jbc]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6jbc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_kodakaraensis_(strain_kod1) Pyrococcus kodakaraensis (strain kod1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JBC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6JBC FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6jbc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JBC FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TK2141 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69014 Pyrococcus kodakaraensis (strain KOD1)])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantoate_kinase Pantoate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.169 2.7.1.169] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jbc OCA], [https://pdbe.org/6jbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jbc RCSB], [https://www.ebi.ac.uk/pdbsum/6jbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jbc ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6jbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jbc OCA], [http://pdbe.org/6jbc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jbc RCSB], [http://www.ebi.ac.uk/pdbsum/6jbc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jbc ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/POK_THEKO POK_THEKO]] Phosphorylates (R)-pantoate to form (R)-4-phosphopantoate in the CoA biosynthesis pathway (PubMed:19666462, PubMed:22865846). Displays broad nucleotide specificity and utilizes ATP, GTP, UTP, and CTP with comparable catalytic efficiencies (PubMed:22865846).<ref>PMID:19666462</ref> <ref>PMID:22865846</ref>
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[https://www.uniprot.org/uniprot/POK_THEKO POK_THEKO] Phosphorylates (R)-pantoate to form (R)-4-phosphopantoate in the CoA biosynthesis pathway (PubMed:19666462, PubMed:22865846). Displays broad nucleotide specificity and utilizes ATP, GTP, UTP, and CTP with comparable catalytic efficiencies (PubMed:22865846).<ref>PMID:19666462</ref> <ref>PMID:22865846</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Pantoate kinase]]
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[[Category: Thermococcus kodakarensis KOD1]]
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[[Category: Atomi, H]]
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[[Category: Atomi H]]
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[[Category: Imanaka, T]]
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[[Category: Imanaka T]]
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[[Category: Kishimoto, A]]
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[[Category: Kishimoto A]]
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[[Category: Kita, A]]
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[[Category: Kita A]]
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[[Category: Miki, K]]
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[[Category: Miki K]]
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[[Category: Shimosaka, T]]
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[[Category: Shimosaka T]]
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[[Category: Tomita, H]]
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[[Category: Tomita H]]
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[[Category: Yokooji, Y]]
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[[Category: Yokooji Y]]
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[[Category: Coa biosynthesis]]
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[[Category: Transferase]]
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Current revision

Phosphotransferase related to CoA biosynthesis pathway

PDB ID 6jbc

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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