This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6qk1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:02, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6qk1' size='340' side='right'caption='[[6qk1]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='6qk1' size='340' side='right'caption='[[6qk1]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6qk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QK1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6QK1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6qk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QK1 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.754&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK2771 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 GEOKA])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qk1 OCA], [https://pdbe.org/6qk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qk1 RCSB], [https://www.ebi.ac.uk/pdbsum/6qk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qk1 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6qk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qk1 OCA], [http://pdbe.org/6qk1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qk1 RCSB], [http://www.ebi.ac.uk/pdbsum/6qk1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qk1 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5KW80_GEOKA Q5KW80_GEOKA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 6qk1" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6qk1" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Geoka]]
+
[[Category: Geobacillus kaustophilus HTA426]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ribonucleoside-diphosphate reductase]]
+
[[Category: Griese JJ]]
-
[[Category: Griese, J J]]
+
[[Category: Hogbom M]]
-
[[Category: Hogbom, M]]
+
-
[[Category: Metalloprotein oxidoreductase]]
+
-
[[Category: Mn/fe cofactor]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: R2-like ligand-binding oxidase]]
+
-
[[Category: Ribonucleotide reductase r2 subunit fold]]
+

Current revision

R2-like ligand-binding oxidase Y175F mutant with aerobically reconstituted Mn/Fe cofactor

PDB ID 6qk1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6qk1"
Personal tools