This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5o9q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:37, 6 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5o9q' size='340' side='right'caption='[[5o9q]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='5o9q' size='340' side='right'caption='[[5o9q]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5o9q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O9Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5O9Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5o9q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O9Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O9Q FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9PH:(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(phenylmethoxymethyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol'>9PH</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GAS2, YLR343W, L8300.5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9PH:(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(phenylmethoxymethyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol'>9PH</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5o9q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o9q OCA], [http://pdbe.org/5o9q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5o9q RCSB], [http://www.ebi.ac.uk/pdbsum/5o9q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5o9q ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o9q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o9q OCA], [https://pdbe.org/5o9q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o9q RCSB], [https://www.ebi.ac.uk/pdbsum/5o9q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o9q ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GAS2_YEAST GAS2_YEAST]] Splits internally a 1,3-beta-glucan molecule and transfers the newly generated reducing end (the donor) to the non-reducing end of another 1,3-beta-glucan molecule (the acceptor) forming a 1,3-beta linkage, resulting in the elongation of 1,3-beta-glucan chains in the cell wall. Involved in spore wall assembly.<ref>PMID:17189486</ref> <ref>PMID:17397106</ref>
+
[https://www.uniprot.org/uniprot/GAS2_YEAST GAS2_YEAST] Splits internally a 1,3-beta-glucan molecule and transfers the newly generated reducing end (the donor) to the non-reducing end of another 1,3-beta-glucan molecule (the acceptor) forming a 1,3-beta linkage, resulting in the elongation of 1,3-beta-glucan chains in the cell wall. Involved in spore wall assembly.<ref>PMID:17189486</ref> <ref>PMID:17397106</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker's yeast]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Aalten, D Van]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Castro-Lopez, J]]
+
[[Category: Castro-Lopez J]]
-
[[Category: Delso, I]]
+
[[Category: Delso I]]
-
[[Category: Fang, W]]
+
[[Category: Fang W]]
-
[[Category: Gomollon-Bel, F]]
+
[[Category: Gomollon-Bel F]]
-
[[Category: Hurtado-Guerrero, R]]
+
[[Category: Hurtado-Guerrero R]]
-
[[Category: Merino, P]]
+
[[Category: Merino P]]
-
[[Category: Navratilova, I]]
+
[[Category: Navratilova I]]
-
[[Category: Tejero, T]]
+
[[Category: Tejero T]]
-
[[Category: Valero-Gonzalez, J]]
+
[[Category: Valero-Gonzalez J]]
-
[[Category: Afgel4]]
+
[[Category: Van Aalten D]]
-
[[Category: Aspergillus fumigatus]]
+
-
[[Category: Cell wall remodeling]]
+
-
[[Category: Fungal cell wall]]
+
-
[[Category: Glucanosyltransferase]]
+
-
[[Category: Scgas2]]
+
-
[[Category: Transferase]]
+
-
[[Category: Transglycosylase]]
+

Current revision

Crystal structure of ScGas2 in complex with compound 6

PDB ID 5o9q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5o9q"
Personal tools