7cpl
From Proteopedia
(Difference between revisions)
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==Xylanase R from Bacillus sp. TAR-1== | ==Xylanase R from Bacillus sp. TAR-1== | ||
| - | <StructureSection load='7cpl' size='340' side='right'caption='[[7cpl]]' scene=''> | + | <StructureSection load='7cpl' size='340' side='right'caption='[[7cpl]], [[Resolution|resolution]] 1.52Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CPL OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[7cpl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._tar1 Bacillus sp. tar1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CPL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CPL FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynA, BH2120 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=502601 Bacillus sp. TAR1])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cpl OCA], [https://pdbe.org/7cpl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cpl RCSB], [https://www.ebi.ac.uk/pdbsum/7cpl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cpl ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The mechanism of thermostabilization of GH10 xylanase, XynR, from Bacillus sp. strain TAR-1 by the mutation of S92 to E was investigated. Thermodynamic analysis revealed that thermostabilization was driven by the decrease in entropy change of activation for thermal inactivation. Crystallographic analysis suggested that this mutation suppressed the fluctuation of the amino acid residues at position 92-95. | ||
| + | |||
| + | Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.,Suzuki M, Takita T, Kuwata K, Nakatani K, Li T, Katano Y, Kojima K, Mizutani K, Mikami B, Yatsunami R, Nakamura S, Yasukawa K Biosci Biotechnol Biochem. 2021 Feb 18;85(2):386-390. doi: 10.1093/bbb/zbaa003. PMID:33604642<ref>PMID:33604642</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7cpl" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Bacillus sp. tar1]] | ||
| + | [[Category: Endo-1,4-beta-xylanase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Katano Y]] | + | [[Category: Katano, Y]] |
| - | [[Category: Kojima K]] | + | [[Category: Kojima, K]] |
| - | [[Category: Kuwata K]] | + | [[Category: Kuwata, K]] |
| - | [[Category: Li T]] | + | [[Category: Li, T]] |
| - | [[Category: Mikami B]] | + | [[Category: Mikami, B]] |
| - | [[Category: Mizutani K]] | + | [[Category: Mizutani, K]] |
| - | [[Category: Nakamura S]] | + | [[Category: Nakamura, S]] |
| - | [[Category: Nakatani K]] | + | [[Category: Nakatani, K]] |
| - | [[Category: Suzuki M]] | + | [[Category: Suzuki, M]] |
| - | [[Category: Takita T]] | + | [[Category: Takita, T]] |
| - | [[Category: Yasukawa K]] | + | [[Category: Yasukawa, K]] |
| - | [[Category: Yatsunami R]] | + | [[Category: Yatsunami, R]] |
| + | [[Category: Gh10]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Thermostabilation]] | ||
| + | [[Category: Xylanase]] | ||
Revision as of 06:53, 24 March 2021
Xylanase R from Bacillus sp. TAR-1
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Categories: Bacillus sp. tar1 | Endo-1,4-beta-xylanase | Large Structures | Katano, Y | Kojima, K | Kuwata, K | Li, T | Mikami, B | Mizutani, K | Nakamura, S | Nakatani, K | Suzuki, M | Takita, T | Yasukawa, K | Yatsunami, R | Gh10 | Hydrolase | Thermostabilation | Xylanase
