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| <StructureSection load='6nz8' size='340' side='right'caption='[[6nz8]], [[Resolution|resolution]] 1.20Å' scene=''> | | <StructureSection load='6nz8' size='340' side='right'caption='[[6nz8]], [[Resolution|resolution]] 1.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6nz8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciba Aciba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NZ8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NZ8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6nz8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baumannii Acinetobacter baumannii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NZ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NZ8 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blaOXA-231, bla-OXA-231, C3415_08220 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=470 ACIBA])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nz8 OCA], [https://pdbe.org/6nz8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nz8 RCSB], [https://www.ebi.ac.uk/pdbsum/6nz8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nz8 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nz8 OCA], [http://pdbe.org/6nz8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nz8 RCSB], [http://www.ebi.ac.uk/pdbsum/6nz8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nz8 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/H9U2W6_ACIBA H9U2W6_ACIBA] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Aciba]] | + | [[Category: Acinetobacter baumannii]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Antunes, V U]] | + | [[Category: Antunes VU]] |
- | [[Category: Farah, S C]] | + | [[Category: Farah SC]] |
- | [[Category: Favaro, D C]] | + | [[Category: Favaro DC]] |
- | [[Category: Lincopan, N]] | + | [[Category: Lincopan N]] |
- | [[Category: Llontop, E E]] | + | [[Category: Llontop EE]] |
- | [[Category: Vasconcelos, F N]] | + | [[Category: Vasconcelos FN]] |
- | [[Category: Beta-lactamase]]
| + | |
- | [[Category: Carbapenemase]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Oxa-143 subgroup]]
| + | |
- | [[Category: Oxacillinase]]
| + | |
| Structural highlights
Function
H9U2W6_ACIBA
Publication Abstract from PubMed
The class D beta-lactamase OXA-143 has been described as an efficient penicillinase, oxacillinase, and carbapenemase. The D224A variant, known as OXA-231, was described in 2012 as exhibiting less activity toward imipenem and increased oxacillinase activity. Additionally, the P227S mutation was reported as a case of convergent evolution for homologous enzymes. To investigate the impact of both mutations (D224A and P227S), we describe in this paper a deep investigation of the enzymatic activities of these three homologues. OXA-143(P227S) presented enhanced catalytic activity against ampicillin, oxacillins, aztreonam, and carbapenems. In addition, OXA-143(P227S) was the only member capable of hydrolyzing ceftazidime. These enhanced activities were due to a combination of a higher affinity (lower Km) and a higher turnover number (higher kcat). We also determined the crystal structure of apo OXA-231. As expected, the structure of this variant is very similar to the published OXA-143 structure, except for the two M223 conformations and the absence of electron density for three solvent-exposed loop segments. Molecular dynamics calculations showed that both mutants experience higher flexibility compared to that of the wild-type form. Therefore, our results illustrate that D224A and P227S act as deleterious and positive mutations, respectively, within the evolutionary path of the OXA-143 subfamily toward a more efficient carbapenemase.
Importance of the beta5-beta6 Loop for the Structure, Catalytic Efficiency, and Stability of Carbapenem-Hydrolyzing Class D beta-Lactamase Subfamily OXA-143.,Antunes VU, Llontop EE, Vasconcelos FNDC, Lopez de Los Santos Y, Oliveira RJ, Lincopan N, Farah CS, Doucet N, Mittermaier A, Favaro DC Biochemistry. 2019 Aug 27;58(34):3604-3616. doi: 10.1021/acs.biochem.9b00365., Epub 2019 Aug 15. PMID:31355630[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Antunes VU, Llontop EE, Vasconcelos FNDC, Lopez de Los Santos Y, Oliveira RJ, Lincopan N, Farah CS, Doucet N, Mittermaier A, Favaro DC. Importance of the beta5-beta6 Loop for the Structure, Catalytic Efficiency, and Stability of Carbapenem-Hydrolyzing Class D beta-Lactamase Subfamily OXA-143. Biochemistry. 2019 Aug 27;58(34):3604-3616. doi: 10.1021/acs.biochem.9b00365., Epub 2019 Aug 15. PMID:31355630 doi:http://dx.doi.org/10.1021/acs.biochem.9b00365
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