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5vnq

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Current revision (13:52, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5vnq' size='340' side='right'caption='[[5vnq]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5vnq' size='340' side='right'caption='[[5vnq]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vnq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VNQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5VNQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vnq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VNQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VNQ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Neutron Diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vnr|5vnr]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">e, T4Tp126 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vnq OCA], [https://pdbe.org/5vnq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vnq RCSB], [https://www.ebi.ac.uk/pdbsum/5vnq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vnq ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5vnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vnq OCA], [http://pdbe.org/5vnq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vnq RCSB], [http://www.ebi.ac.uk/pdbsum/5vnq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vnq ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5vnq" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5vnq" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Lysin 3D structures|Lysin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bpt4]]
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[[Category: Escherichia virus T4]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lysozyme]]
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[[Category: Cuneo MJ]]
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[[Category: Cuneo, M J]]
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[[Category: Li L]]
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[[Category: Li, L]]
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[[Category: Meilleur F]]
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[[Category: Meilleur, F]]
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[[Category: Myles DAA]]
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[[Category: Myles, D A.A]]
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[[Category: Pierce J]]
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[[Category: Pierce, J]]
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[[Category: Shukla S]]
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[[Category: Shukla, S]]
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[[Category: Standaert RF]]
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[[Category: Standaert, R F]]
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[[Category: Hydrogen bond]]
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[[Category: Hydrogen bonding network]]
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[[Category: Hydrolase]]
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[[Category: Neutron crystallography]]
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[[Category: T4 lysozyme]]
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[[Category: Water]]
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Current revision

Neutron crystallographic structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature

PDB ID 5vnq

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OCA

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