5x7n

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Current revision (07:55, 22 November 2023) (edit) (undo)
 
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<StructureSection load='5x7n' size='340' side='right'caption='[[5x7n]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
<StructureSection load='5x7n' size='340' side='right'caption='[[5x7n]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5x7n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Corgl Corgl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X7N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5X7N FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5x7n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum_ATCC_13032 Corynebacterium glutamicum ATCC 13032]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X7N FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x7m|5x7m]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lysA, Cgl1180, cg1334 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=196627 CORGL])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x7n OCA], [https://pdbe.org/5x7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x7n RCSB], [https://www.ebi.ac.uk/pdbsum/5x7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x7n ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_decarboxylase Diaminopimelate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.20 4.1.1.20] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5x7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x7n OCA], [http://pdbe.org/5x7n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x7n RCSB], [http://www.ebi.ac.uk/pdbsum/5x7n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x7n ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DCDA_CORGL DCDA_CORGL]] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.[HAMAP-Rule:MF_02120]
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[https://www.uniprot.org/uniprot/DCDA_CORGL DCDA_CORGL] Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.[HAMAP-Rule:MF_02120]
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Corgl]]
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[[Category: Corynebacterium glutamicum ATCC 13032]]
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[[Category: Diaminopimelate decarboxylase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kim, K J]]
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[[Category: Kim K-J]]
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[[Category: Son, H F]]
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[[Category: Son H-F]]
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[[Category: Decarboxylase]]
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[[Category: Lyase]]
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Current revision

Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum

PDB ID 5x7n

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