6wza
From Proteopedia
(Difference between revisions)
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==Ni-bound structure of an engineered metal-dependent protein trimer, TriCyt1== | ==Ni-bound structure of an engineered metal-dependent protein trimer, TriCyt1== | ||
- | <StructureSection load='6wza' size='340' side='right'caption='[[6wza]]' scene=''> | + | <StructureSection load='6wza' size='340' side='right'caption='[[6wza]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WZA OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WZA FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6wza]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WZA OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WZA FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wza OCA], [http://pdbe.org/6wza PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wza RCSB], [http://www.ebi.ac.uk/pdbsum/6wza PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wza ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wza OCA], [http://pdbe.org/6wza PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wza RCSB], [http://www.ebi.ac.uk/pdbsum/6wza PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wza ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | <div class="abstract"> <div><p class="Abstract" style="margin: 0in 0in 0.25in; text-align: justify; line-height: 11.25pt; font-size: 8pt; font-family: Arial, sans-serif; caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0);">To mimic a hypothetical pathway for protein evolution, we previously developed a design strategy (Metal-Templated Interface Redesign), in which a monomeric protein (cytochrome&nbsp;<i>cb<sub>5</sub></i><sub>62&l t;/sub>) was tailored for metal-mediated self-assembly, followed by the re-design of the resulting oligomers for enhanced stability and metal-based functions. Here we show that a single hydrophobic mutation on the cytochrome&nbsp;<i>cb</i><sub>562</sub>&nbsp;surf ace can drastically alter the outcome of metal-directed oligomerization to yield a new trimeric architecture, (TriCyt1)<sub>3</sub>, featuring an unusual hexa-histidine coordination motif. Through computational and rational redesign, this nascent trimer is converted into second and third-generation variants (TriCyt2)<sub>3</sub>&nbsp;and (TriCyt3)<sub>3</sub>&nbsp;with increased structural stability and preorganization for metal coordination. The three TriCyt variants combined furnish a unique design platform to a) provide tunable coupling between protein quaternary structure and metal coordination, b) enable the construction of metal/pH-switchable protein oligomerization motifs, and c) generate a robust metal coordination site that can accommodate all mid-to-late first-row transition metal ions with high affinity, including Mn(II) with nanomolar dissociation constants,&nbsp;&nbsp;rivaling those of the strongest Mn(II)-binding protein, calprotectin.&nbsp;<span lang="EN-GB" style="color: red;"><o:p></o:p></span></p> </div> </div>. | ||
+ | |||
+ | Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.,Tezcan FA, Kakkis A, Gagnon D, Esselborn J, Britt RD Angew Chem Int Ed Engl. 2020 Aug 23. doi: 10.1002/anie.202009226. PMID:32830423<ref>PMID:32830423</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6wza" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Bacillus coli migula 1895]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Kakkis A]] | + | [[Category: Kakkis, A]] |
- | [[Category: Tezcan | + | [[Category: Tezcan, F A]] |
+ | [[Category: Four-helix bundle]] | ||
+ | [[Category: Metal binding protein]] | ||
+ | [[Category: Metalloprotein trimer]] |
Revision as of 12:52, 16 December 2020
Ni-bound structure of an engineered metal-dependent protein trimer, TriCyt1
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