6m6j

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==NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats==
==NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats==
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<StructureSection load='6m6j' size='340' side='right'caption='[[6m6j]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='6m6j' size='340' side='right'caption='[[6m6j]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6m6j]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M6J OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6M6J FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6m6j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M6J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M6J FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6m6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m6j OCA], [http://pdbe.org/6m6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m6j RCSB], [http://www.ebi.ac.uk/pdbsum/6m6j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m6j ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m6j OCA], [https://pdbe.org/6m6j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m6j RCSB], [https://www.ebi.ac.uk/pdbsum/6m6j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m6j ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Here we report that incorporation of an abasic site to DNA minidumbbells formed by natural sequences can lead to significant enhancements in their thermodynamic stability. Based on these stable minidumbbells, the first metal ion-controlled molecular switch which can regulate instant and reversible DNA duplex formation and dissociation has been constructed.
 
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Rational design of a reversible Mg(2+)/EDTA-controlled molecular switch based on a DNA minidumbbell.,Wan L, Lam SL, Lee HK, Guo P Chem Commun (Camb). 2020 Sep 1;56(70):10127-10130. doi: 10.1039/d0cc03774e. PMID:32870195<ref>PMID:32870195</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6m6j" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Guo, P]]
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[[Category: Guo P]]
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[[Category: Lam, S L]]
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[[Category: Lam SL]]
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[[Category: Wan, L]]
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[[Category: Wan L]]
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[[Category: Abasic site]]
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[[Category: Bulge]]
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[[Category: Dna]]
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[[Category: Minidumbbell]]
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Current revision

NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats

PDB ID 6m6j

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