5t1v
From Proteopedia
(Difference between revisions)
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<StructureSection load='5t1v' size='340' side='right'caption='[[5t1v]], [[Resolution|resolution]] 3.10Å' scene=''> | <StructureSection load='5t1v' size='340' side='right'caption='[[5t1v]], [[Resolution|resolution]] 3.10Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5t1v]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5t1v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5T1V FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5t1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t1v OCA], [https://pdbe.org/5t1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5t1v RCSB], [https://www.ebi.ac.uk/pdbsum/5t1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5t1v ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/POLG_ZIKV POLG_ZIKV] Protein C: Encapsulates the genomic RNA.[UniProtKB:P17763] prM: Acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated.[UniProtKB:P17763] Envelope protein E: Binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes.[UniProtKB:P17763] Non-structural protein 1: Involved in virus replication and regulation of the innate immune response.[UniProtKB:P17763] Non-structural protein 2A: May be involved viral RNA replication and capsid assembly.[UniProtKB:P09732] Non-structural protein 4A: Induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the helicase region of Serine protease NS3 chain.[UniProtKB:P17763] Peptide 2k: Functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter.[UniProtKB:P17763] Non-structural protein 4B: Inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway.[UniProtKB:P17763] |
+ | |||
+ | ==See Also== | ||
+ | *[[Virus protease 3D structures|Virus protease 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Zika virus]] |
- | [[Category: Anderson | + | [[Category: Anderson WF]] |
+ | [[Category: Cardona-Correa AA]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
- | + | [[Category: Johnson ME]] | |
- | [[Category: Johnson | + | [[Category: Lee H]] |
- | [[Category: Lee | + | [[Category: Light SH]] |
- | [[Category: Light | + | [[Category: Minasov G]] |
- | [[Category: Minasov | + | [[Category: Nocadello S]] |
- | [[Category: Nocadello | + | [[Category: Ojeda I]] |
- | [[Category: Ojeda | + | [[Category: Shuvalova L]] |
- | [[Category: Shuvalova | + | [[Category: Vargas J]] |
- | [[Category: Vargas | + | |
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Current revision
Crystal structure of Zika virus NS2B-NS3 protease in apo-form.
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Categories: Large Structures | Zika virus | Anderson WF | Cardona-Correa AA | Structural genomic | Johnson ME | Lee H | Light SH | Minasov G | Nocadello S | Ojeda I | Shuvalova L | Vargas J