|
|
| Line 3: |
Line 3: |
| | <StructureSection load='6upe' size='340' side='right'caption='[[6upe]], [[Resolution|resolution]] 2.24Å' scene=''> | | <StructureSection load='6upe' size='340' side='right'caption='[[6upe]], [[Resolution|resolution]] 2.24Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6upe]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salts Salts]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UPE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6UPE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6upe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UPE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UPE FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OGS:4-octylphenyl+6-O-sulfo-alpha-D-glucopyranoside'>OGS</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.244Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">otsB, SL1344_1863 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=216597 SALTS])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OGS:4-octylphenyl+6-O-sulfo-alpha-D-glucopyranoside'>OGS</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trehalose-phosphatase Trehalose-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.12 3.1.3.12] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6upe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6upe OCA], [https://pdbe.org/6upe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6upe RCSB], [https://www.ebi.ac.uk/pdbsum/6upe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6upe ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6upe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6upe OCA], [http://pdbe.org/6upe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6upe RCSB], [http://www.ebi.ac.uk/pdbsum/6upe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6upe ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/OTSB_SALTS OTSB_SALTS]] Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | + | [https://www.uniprot.org/uniprot/OTSB_SALTS OTSB_SALTS] Removes the phosphate from trehalose 6-phosphate to produce free trehalose. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 25: |
Line 24: |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Salts]] | + | [[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]] |
| - | [[Category: Trehalose-phosphatase]]
| + | [[Category: Allen KN]] |
| - | [[Category: Allen, K N]] | + | [[Category: Harvey CM]] |
| - | [[Category: Harvey, C M]] | + | [[Category: O'Toole KH]] |
| - | [[Category: Toole, K H.O]] | + | |
| - | [[Category: Had superfamily]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Rossmann fold]]
| + | |
| - | [[Category: Sugar binding]]
| + | |
| Structural highlights
Function
OTSB_SALTS Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
Publication Abstract from PubMed
Trehalose-6-phosphate phosphatase (T6PP) catalyzes the dephosphorylation of trehalose 6-phosphate (T6P) to the disaccharide trehalose. The enzyme is not present in mammals but is essential to the viability of multiple lower organisms as trehalose is a critical metabolite, and T6P accumulation is toxic. Hence, T6PP is a target for therapeutics of human pathologies caused by bacteria, fungi, and parasitic nematodes. Here, we report the X-ray crystal structures of Salmonella typhimurium T6PP (StT6PP) in its apo form and in complex with the cofactor Mg(2+) and the substrate analogue trehalose 6-sulfate (T6S), the product trehalose, or the competitive inhibitor 4-n-octylphenyl alpha-d-glucopyranoside 6-sulfate (OGS). OGS replaces the substrate phosphoryl group with a sulfate group and the glucosyl ring distal to the sulfate group with an octylphenyl moiety. The structures of these substrate-analogue and product complexes with T6PP show that specificity is conferred via hydrogen bonds to the glucosyl group proximal to the phosphoryl moiety through Glu123, Lys125, and Glu167, conserved in T6PPs from multiple species. The structure of the first-generation inhibitor OGS shows that it retains the substrate-binding interactions observed for the sulfate group and the proximal glucosyl ring. The OGS octylphenyl moiety binds in a unique manner, indicating that this subsite can tolerate various chemotypes. Together, these findings show that these conserved interactions at the proximal glucosyl ring binding site could provide the basis for the development of broad-spectrum therapeutics, whereas variable interactions at the divergent distal subsite could present an opportunity for the design of potent organism-specific therapeutics.
Structural Analysis of Binding Determinants of Salmonella typhimurium Trehalose-6-phosphate Phosphatase Using Ground-State Complexes.,Harvey CM, O'Toole KH, Liu C, Mariano P, Dunaway-Mariano D, Allen KN Biochemistry. 2020 Aug 17. doi: 10.1021/acs.biochem.0c00317. PMID:32786412[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Harvey CM, O'Toole KH, Liu C, Mariano P, Dunaway-Mariano D, Allen KN. Structural Analysis of Binding Determinants of Salmonella typhimurium Trehalose-6-phosphate Phosphatase Using Ground-State Complexes. Biochemistry. 2020 Aug 17. doi: 10.1021/acs.biochem.0c00317. PMID:32786412 doi:http://dx.doi.org/10.1021/acs.biochem.0c00317
|
