This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3i9o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:56, 1 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3i9o' size='340' side='right'caption='[[3i9o]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='3i9o' size='340' side='right'caption='[[3i9o]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3i9o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aplca Aplca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9O OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3I9O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3i9o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I9O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AVW:[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3R,4S)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVW</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_nucleosidase NAD(+) nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.5 3.2.2.5] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AVW:[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3R,4S)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVW</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3i9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9o OCA], [http://pdbe.org/3i9o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i9o RCSB], [http://www.ebi.ac.uk/pdbsum/3i9o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3i9o ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9o OCA], [https://pdbe.org/3i9o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i9o RCSB], [https://www.ebi.ac.uk/pdbsum/3i9o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i9o ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NADA_APLCA NADA_APLCA]] Synthesizes the second messagers cyclic ADP-ribose and nicotinate-adenine dinucleotide phosphate, the former a second messenger for calcium mobilization from endoplasmic reticulum. Also has cADPr hydrolase activity.<ref>PMID:11829748</ref>
+
[https://www.uniprot.org/uniprot/NADA_APLCA NADA_APLCA] Synthesizes the second messagers cyclic ADP-ribose and nicotinate-adenine dinucleotide phosphate, the former a second messenger for calcium mobilization from endoplasmic reticulum. Also has cADPr hydrolase activity.<ref>PMID:11829748</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 36: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aplca]]
+
[[Category: Aplysia californica]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Graeff, R]]
+
[[Category: Graeff R]]
-
[[Category: Hao, Q]]
+
[[Category: Hao Q]]
-
[[Category: Kotaka, M]]
+
[[Category: Kotaka M]]
-
[[Category: Kriksunov, I A]]
+
[[Category: Kriksunov IA]]
-
[[Category: Lee, H C]]
+
[[Category: Lee HC]]
-
[[Category: Liu, Q]]
+
[[Category: Liu Q]]
-
[[Category: Oppenheimer, N]]
+
[[Category: Oppenheimer N]]
-
[[Category: Adp-ribosyl cyclase]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Enzyme-reaction-intermediate complex]]
+
-
[[Category: Fertilization]]
+
-
[[Category: Homodimer]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nad]]
+

Current revision

Crystal structure of ADP ribosyl cyclase complexed with ribo-2'F-ADP ribose

PDB ID 3i9o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools