This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5u38

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:18, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5u38' size='340' side='right'caption='[[5u38]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
<StructureSection load='5u38' size='340' side='right'caption='[[5u38]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5u38]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Platypodium_elegans Platypodium elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U38 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5U38 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5u38]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Platypodium_elegans Platypodium elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U38 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5U38 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MMA:O1-METHYL-MANNOSE'>MMA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5u38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u38 OCA], [http://pdbe.org/5u38 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5u38 RCSB], [http://www.ebi.ac.uk/pdbsum/5u38 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5u38 ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MMA:O1-METHYL-MANNOSE'>MMA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5u38 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u38 OCA], [https://pdbe.org/5u38 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5u38 RCSB], [https://www.ebi.ac.uk/pdbsum/5u38 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5u38 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/G1EUI6_9FABA G1EUI6_9FABA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 25:
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Platypodium elegans]]
[[Category: Platypodium elegans]]
-
[[Category: Araripe, D A]]
+
[[Category: Araripe DA]]
-
[[Category: Cavada, B S]]
+
[[Category: Cavada BS]]
-
[[Category: Leal, R B]]
+
[[Category: Leal RB]]
-
[[Category: Nascimento, K S]]
+
[[Category: Nascimento KS]]
-
[[Category: Neco, A H.B]]
+
[[Category: Neco AHB]]
-
[[Category: Osterne, V J.S]]
+
[[Category: Osterne VJS]]
-
[[Category: Pinto-Junior, V R]]
+
[[Category: Pinto-Junior VR]]
-
[[Category: Rocha, C R.C]]
+
[[Category: Rocha CRC]]
-
[[Category: Santiago, M Q]]
+
[[Category: Santiago MQ]]
-
[[Category: Silva, I B]]
+
[[Category: Silva IB]]
-
[[Category: Silva-Filho, J C]]
+
[[Category: Silva-Filho JC]]
-
[[Category: Lectin]]
+
-
[[Category: Man1-3man-ome]]
+
-
[[Category: Platypodium elegan]]
+
-
[[Category: Sugar binding protein]]
+

Current revision

Crystal structure of native lectin from Platypodium elegans seeds (PELa) complexed with Man1-3Man-OMe.

PDB ID 5u38

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5u38"
Personal tools