This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5v0n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:38, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5v0n' size='340' side='right'caption='[[5v0n]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
<StructureSection load='5v0n' size='340' side='right'caption='[[5v0n]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5v0n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V0N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V0N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5v0n]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V0N FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8W4:N-{(1S,2S)-1-[(2S)-4-BENZYL-3-OXOPIPERAZIN-2-YL]-1-HYDROXY-3-PHENYLPROPAN-2-YL}-7-ETHYL-1,3,3-TRIMETHYL-2,2-DIOXO-1,2,3,4-TETRAHYDRO-2LAMBDA~6~-[1,2,5]THIADIAZEPINO[3,4,5-HI]INDOLE-9-CARBOXAMIDE'>8W4</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URE:UREA'>URE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.155&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BACE1, BACE, KIAA1149 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8W4:N-{(1S,2S)-1-[(2S)-4-BENZYL-3-OXOPIPERAZIN-2-YL]-1-HYDROXY-3-PHENYLPROPAN-2-YL}-7-ETHYL-1,3,3-TRIMETHYL-2,2-DIOXO-1,2,3,4-TETRAHYDRO-2LAMBDA~6~-[1,2,5]THIADIAZEPINO[3,4,5-HI]INDOLE-9-CARBOXAMIDE'>8W4</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=URE:UREA'>URE</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Memapsin_2 Memapsin 2], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.46 3.4.23.46] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v0n OCA], [https://pdbe.org/5v0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v0n RCSB], [https://www.ebi.ac.uk/pdbsum/5v0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v0n ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v0n OCA], [http://pdbe.org/5v0n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v0n RCSB], [http://www.ebi.ac.uk/pdbsum/5v0n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v0n ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
+
[https://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Memapsin 2]]
+
[[Category: Ghosh A]]
-
[[Category: Ghosh, A]]
+
[[Category: Mesecar A]]
-
[[Category: Mesecar, A]]
+
[[Category: Yen Y-C]]
-
[[Category: Yen, Y C]]
+
-
[[Category: Bace1-inhibitor complex]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+

Current revision

BACE1 in complex with inhibitor 5g

PDB ID 5v0n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5v0n"
Personal tools